Evidence map›Paper›PMID 19891788›Full record

ArticleVirology journal2009

Phylogenetic analysis of Newcastle disease viruses isolated from waterfowl in the upper midwest region of the United States.

Naresh Jindal, Yogesh Chander, Ashok K Chockalingam, Martha de Abin, Patrick T Redig, Sagar M Goyal

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 58 citations in OpenAlex.

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  8. Isolation and genetic characterization of virulent strains of avian paramyxovirus-1 from multiple avian species in Azad Jammu and Kashmir 2017-2018.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
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  12. Urbanization and the dynamics of RNA viruses in Mallards (Anas platyrhynchos).Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2017
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  16. Temporal dynamics, diversity, and interplay in three components of the virodiversity of a Mallard population: influenza A virus, avian paramyxovirus and avian coronavirus.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Naresh JindalDepartment of Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, 1333 Gortner Avenue, Saint Paul, MN, 55108, USA. jinda014@umn.edu
Yogesh Chander
Ashok K Chockalingam
Martha de Abin
Patrick T Redig
Sagar M Goyal
University of Minnesota · US

Funding

NIAID NIH HHS HHSN266200700007C
6 · The paper itself

Abstract

backgroundThis study was conducted to characterize Newcastle disease virus (NDV) isolates obtained from waterfowl from the Upper Midwest region of the United States. A total of 43 NDVs were isolated by inoculation of cloacal samples in embryonated chicken eggs. These isolates were obtained from 24 mallards, seven American green-winged teals, six northern pintails, four blue-winged teals, and two wood ducks. Partial sequences of fusion gene were analyzed to determine the pathotypes and genotypes involved.

resultsDeduced amino acid sequence of the cleavage site of fusion (F) protein revealed that all isolates had avirulent motifs. Of the 43 isolates, 23 exhibited sequence motif of (111)GGKQGRL(117) at the cleavage site, 19 exhibited (111)GEKQGRL(117) while one isolate showed (111)GERQGRL(117). Phylogenetic analysis based on comparison with different classes of NDVs revealed that all 43 isolates clustered with class II NDVs and none with class I NDVs. Within class II, five isolates were phylogenetically close to genotype I NDVs while the remaining 38 were close to genotype II.

conclusionWe conclude that more than one genotype of NDV circulates in waterfowl in the Upper Midwest region of the US. Continuous surveillance may help better understand the epidemiology of NDVs maintained in wild bird populations and their relationship to NDVs in domestic poultry, if any.

Indexed as

PhylogenyPolymorphism, GeneticAmino Acid MotifsAnimalsAnseriformesBird DiseasesCloacaCluster AnalysisGenotypeMidwestern United StatesMolecular Sequence DataNewcastle DiseaseNewcastle disease virusSequence Analysis, DNASequence HomologyViral Fusion ProteinsViral Fusion Proteins

Identifiers

PMID19891788
PMCPMC2776597
OpenAlexW2049582500

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.