Evidence map›Paper›PMID 19889825›Full record

ArticleThe American journal of clinical nutrition2010

Evidence that multiple genetic variants of MC4R play a functional role in the regulation of energy expenditure and appetite in Hispanic children.

Shelley A Cole, Nancy F Butte, V Saroja Voruganti, Guowen Cai, Karin Haack, Jack W Kent, John Blangero, Anthony G Comuzzie, John D McPherson, Richard A Gibbs

Abstract read
In one paragraph

Article in The American journal of clinical nutrition, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.

  1. Genetic variants related to physical activity or sedentary behaviour: a systematic review.The international journal of behavioral nutrition and physical activity · 2021
    Pooled it
  2. Dietary Protein Modifies the Effect of theThe Journal of nutrition · 2017
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  9. International journal of endocrinology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Shelley A ColeDepartment of Genetics, Southwest Foundation for Biomedical Research, San Antonio, TX, USA.
Nancy F Butte
V Saroja Voruganti
Guowen Cai
Karin Haack
Jack W Kent
John Blangero
Anthony G Comuzzie
John D McPherson
Richard A Gibbs
Texas Biomedical Research Institute · USBaylor College of Medicine · USOntario Institute for Cancer Research · CASAS Institute (United States) · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Quantitative Trait Locus Mapping in Human PedigreesR37MH059490 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2001 to 2010
$6.8M
EXTRAMULAR RESEARCH FACILITIES CONSTRUCTIONC06RR017515 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 2003 to 2003
$3.1M
GENETICS OF CHILDHOOD OBESITYR01DK059264 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI BUTTE, NANCY F · 2000 to 2004
$2.7M
Obesity and Diabetes Familial Risk in Hispanic ChildrenR01DK080457 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI BUTTE, NANCY F. · 2009 to 2012
$2.5M
QUANTITATIVE TRAIT LOCUS MAPPING IN HUMAN PEDIGREESR01MH059490 · NIMH · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI BLANGERO, JOHN · 1998 to 2000
$426k
MOLECULAR AND BIOCHEMICAL GENETICS LABORATORY RENOVATIONC06RR013556 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 1998 to 1998
–
NCRR NIH HHS C06 RR017515NCRR NIH HHS C06 RR13556NHGRI NIH HHS U54 HG003273NIDDK NIH HHS DK59264NIDDK NIH HHS R01 DK059264NIDDK NIH HHS R01 DK080457NIMH NIH HHS MH59490
6 · The paper itself

Abstract

backgroundMelanocortin-4-receptor (MC4R) haploinsufficiency is the most common form of monogenic obesity; however, the frequency of MC4R variants and their functional effects in general populations remain uncertain.

objectiveThe aim was to identify and characterize the effects of MC4R variants in Hispanic children.

designMC4R was resequenced in 376 parents, and the identified single nucleotide polymorphisms (SNPs) were genotyped in 613 parents and 1016 children from the Viva la Familia cohort. Measured genotype analysis (MGA) tested associations between SNPs and phenotypes. Bayesian quantitative trait nucleotide (BQTN) analysis was used to infer the most likely functional polymorphisms influencing obesity-related traits.

resultsSeven rare SNPs in coding and 18 SNPs in flanking regions of MC4R were identified. MGA showed suggestive associations between MC4R variants and body size, adiposity, glucose, insulin, leptin, ghrelin, energy expenditure, physical activity, and food intake. BQTN analysis identified SNP 1704 in a predicted micro-RNA target sequence in the downstream flanking region of MC4R as a strong, probable functional variant influencing total, sedentary, and moderate activities with posterior probabilities of 1.0. SNP 2132 was identified as a variant with a high probability (1.0) of exerting a functional effect on total energy expenditure and sleeping metabolic rate. SNP rs34114122 was selected as having likely functional effects on the appetite hormone ghrelin, with a posterior probability of 0.81.

conclusionThis comprehensive investigation provides strong evidence that MC4R genetic variants are likely to play a functional role in the regulation of weight, not only through energy intake but through energy expenditure.

Indexed as

Genetic VariationAdultAppetiteBody Mass IndexBody SizeChildChromosomes, Human, Pair 18Energy IntakeEnergy MetabolismExerciseExonsFamilyGenotypeHispanic or LatinoHumansLife StyleMC4R protein, humanMicroRNAsReceptor, Melanocortin, Type 4

Identifiers

PMID19889825
PMCPMC2793108
OpenAlexW2044777756

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.