Evidence map›Paper›PMID 19888898›Full record

ArticleJournal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research2010

Hip geometry variation is associated with bone mineralization pathway gene variants: The Framingham Study.

Ching-Lung Cheung, Gregory Livshits, Yanhua Zhou, James B Meigs, Jarred B McAteer, Jose C Florez, L Adrienne Cupples, Serkalem Demissie, Douglas P Kiel, David Karasik

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Meta-Analysis of Genomewide Association Studies Reveals Genetic Variants for Hip Bone Geometry.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2019
    Pooled it
  2. Article
  3. Article
  4. Human Heterozygous ENPP1 Deficiency Is Associated With Early Onset Osteoporosis, a Phenotype Recapitulated in a Mouse Model of Enpp1 Deficiency.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2020
    Article
  5. ENPP1 and ESR1 genotypes associated with subclassifications of craniofacial asymmetry and severity of temporomandibular disorders.American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics · 2017
    Article
  6. Condylar geometry variation is associated with ENPP1 variant in a population of patients with dento-facial deformities.Journal of cranio-maxillo-facial surgery : official publication of the European Association for Cranio-Maxillo-Facial Surgery · 2017
    Article
  7. ENPP1 and ESR1 genotypes influence temporomandibular disorders development and surgical treatment response in dentofacial deformities.Journal of cranio-maxillo-facial surgery : official publication of the European Association for Cranio-Maxillo-Facial Surgery · 2016
    Article
  8. ACTN3 R577X genotypes associate with Class II and deepbite malocclusions.American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Ching-Lung CheungHebrew SeniorLife Institute for Aging Research, Harvard Medical School, Boston, MA, USA.
Gregory Livshits
Yanhua Zhou
James B Meigs
Jarred B McAteer
Jose C Florez
L Adrienne Cupples
Serkalem Demissie
Douglas P Kiel
David Karasik
Boston University · USHarvard University · USHebrew SeniorLife · USBroad Institute · USTel Aviv University · IL

Funding

RISK FACTORS FOR VERTEBRAL FRACTURE AND BONE LOSSR01AR041398 · NIAMS · RHODE ISLAND HOSPITAL (PROVIDENCE, RI) · PI KIEL, DOUGLAS P. · 1991 to 2025
$16.1M
GENOMICS OF CARDIOVASCULAR DEVELOPMENT, ADAPTIONU01HL066582 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI SEIDMAN, JONATHAN G · 2000 to 2004
$14.9M
GENETICS OF BONE STRUCTURAL GEOMETRY: FRAMINGHAM COHORTSR01AR050066 · NIAMS · HEBREW REHABILITATION CENTER FOR AGED · PI KARASIK, DAVID · 2003 to 2006
$2.4M
Epidemiology of Precursors to Type 2 DiabetesK24DK080140 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MEIGS, JAMES B · 2007 to 2016
$1.9M
Unraveling Musculoskeletal Pleiotropy Using Genome-Wide AssociationR01AR057118 · NIAMS · HEBREW REHABILITATION CENTER FOR AGED · PI KARASIK, DAVID · 2009 to 2010
$685k
THE FRAMINGHAM HEART STUDY-N01HC25195-268025195-268025195N01HC025195 · HC · TRUSTEES OF BOSTON UNIVERSITY · PI WOLF, PHILIP A · 2002 to 2006
–
NHLBI NIH HHS 1U01 HL066582NHLBI NIH HHS N01 HC025195NHLBI NIH HHS U01 HL066582NIAMS NIH HHS AR 050066NIAMS NIH HHS AR 057118NIAMS NIH HHS R01 AR041398NIAMS NIH HHS R01 AR050066NIAMS NIH HHS R01 AR057118NIDDK NIH HHS K24 DK080140
6 · The paper itself

Abstract

Mineralization of bone matrix is an important process in bone formation; thus defects in mineralization have been implicated in bone mineral density (BMD) and bone structure alterations. Three central regulators of phosphate balance, ALPL, ANKH, and ENPP1, are central in the matrix mineralization process; therefore, the genes encoding them are considered important candidates genes for BMD and bone geometry. To test for an association between these three candidate genes and BMD and bone geometry traits, 124 informative singlenucleotide polymorphisms (SNPs) were selected and genotyped in 1513 unrelated subjects from the Framingham offspring cohort. Initial results showed that SNP rs1974201 in the gene ENPP1 was a susceptibility variant associated with several hip geometric indices, with the strongest p value of 3.8 × 10(7) being observed for femoral neck width. A few modest associations were observed between SNPs in or near ALPL and several bone traits, but no association was observed with ANKH. The association signals observed for SNPs around rs1974201 were attenuated after conditional analysis on rs1974201. Transcription factor binding-site prediction revealed that the HOXA7 binding site was present in the reference sequence with the major allele, whereas this potential binding site is lost in the sequence with the minor allele of rs1974201. In conclusion, we found evidence for association of bone geometry variation with an SNP in ENPP1, a gene in the mineralization pathway. The alteration of a binding site of the deregulator of extracellular matrix HOXA7 warrants further investigation.

Indexed as

AgedAlkaline PhosphataseBinding SitesBone DensityCalcification, PhysiologicCohort StudiesFemaleGenotypeHipHomeodomain ProteinsHumansMaleMiddle AgedOsteoporosisPhosphate Transport ProteinsPhosphoric Diester HydrolasesAlkaline PhosphataseALPL protein, humanANKH protein, humanectonucleotide pyrophosphatase phosphodiesterase 1Homeodomain ProteinsHOXA7 protein, humanPhosphate Transport ProteinsPhosphoric Diester HydrolasesPyrophosphatases

Identifiers

PMID19888898
PMCPMC3312740
OpenAlexW2010508125

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.