Evidence map›Paper›PMID 19887637›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

A nonsense mutation in cGMP-dependent type II protein kinase (PRKG2) causes dwarfism in American Angus cattle.

James E Koltes, Bishnu P Mishra, Dinesh Kumar, Ranjit S Kataria, Liviu R Totir, Rohan L Fernando, Rowland Cobbold, David Steffen, Wouter Coppieters, Michel Georges and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 53 citations in OpenAlex.

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  8. Genes · 2021
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  13. Nitric oxide and cyclic GMP functions in bone.Nitric oxide : biology and chemistry · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

James E KoltesDepartment of Animal Science, Iowa State University, 2255 Kildee Hall, Ames, IA 50011-3150, USA.
Bishnu P Mishra
Dinesh Kumar
Ranjit S Kataria
Liviu R Totir
Rohan L Fernando
Rowland Cobbold
David Steffen
Wouter Coppieters
Michel Georges
James M Reecy
Iowa State University · USUniversity of Liège · BEUniversity of Nebraska–Lincoln · USUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Historically, dwarfism was the major genetic defect in U.S. beef cattle. Aggressive culling and sire testing were used to minimize its prevalence; however, neither of these practices can eliminate a recessive genetic defect. We assembled a 4-generation pedigree to identify the mutation underlying dwarfism in American Angus cattle. An adaptation of the Elston-Steward algorithm was used to overcome small pedigree size and missing genotypes. The dwarfism locus was fine-mapped to BTA6 between markers AFR227 and BM4311. Four candidate genes were sequenced, revealing a nonsense mutation in exon 15 of cGMP-dependant type II protein kinase (PRKG2). This C/T transition introduced a stop codon (R678X) that truncated 85 C-terminal amino acids, including a large portion of the kinase domain. Of the 75 mutations discovered in this region, only this mutation was 100% concordant with the recessive pattern of inheritance in affected and carrier individuals (log of odds score = 6.63). Previous research has shown that PRKG2 regulates SRY (sex-determining region Y) box 9 (SOX9)-mediated transcription of collagen 2 (COL2). We evaluated the ability of wild-type (WT) or R678X PRKG2 to regulate COL2 expression in cell culture. Real-time PCR results confirmed that COL2 is overexpressed in cells that overexpressed R678X PRKG2 as compared with WT PRKG2. Furthermore, COL2 and COL10 mRNA expression was increased in dwarf cattle compared with unaffected cattle. These experiments indicate that the R678X mutation is functional, resulting in a loss of PRKG2 regulation of COL2 and COL10 mRNA expression. Therefore, we present PRKG2 R678X as a causative mutation for dwarfism cattle.

Indexed as

Codon, NonsenseAmino Acid SequenceAnimalsCattleCells, CulturedCollagen Type IICollagen Type XCyclic GMP-Dependent Protein KinasesCyclic GMP-Dependent Protein Kinase Type IIDwarfismExonsGene Expression RegulationGrowth PlateMolecular Sequence DataRNA, MessengerRNA StabilityCodon, NonsenseCollagen Type IICollagen Type XCyclic GMP-Dependent Protein KinasesCyclic GMP-Dependent Protein Kinase Type IIRNA, Messenger

Identifiers

PMID19887637
PMCPMC2780805
OpenAlexW2152357897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.