Evidence map›Paper›PMID 19887455›Full record

ArticleThe Journal of biological chemistry2010

C-terminal domain modulates the nucleic acid chaperone activity of human T-cell leukemia virus type 1 nucleocapsid protein via an electrostatic mechanism.

Dominic F Qualley, Kristen M Stewart-Maynard, Fei Wang, Mithun Mitra, Robert J Gorelick, Ioulia Rouzina, Mark C Williams, Karin Musier-Forsyth

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Protein-nucleic acid interactions of LINE-1 ORF1p.Seminars in cell & developmental biology · 2019
    Review
  8. Article
  9. Proteins That Chaperone RNA Regulation.Microbiology spectrum · 2018
    Review
  10. Hfq chaperone brings speed dating to bacterial sRNA.Wiley interdisciplinary reviews. RNA · 2018
    Review
  11. Article
  12. Article
  13. C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Dominic F QualleyDepartment of Chemistry and Biochemistry, Center for Retrovirus Research, Ohio State University, Columbus, Ohio 43210, USA.
Kristen M Stewart-Maynard
Fei Wang
Mithun Mitra
Robert J Gorelick
Ioulia Rouzina
Mark C Williams
Karin Musier-Forsyth
The Ohio State University · USNortheastern University · USUniversity of Minnesota · USNational Institutes of Health · US

Funding

RNA Binding and Packaging By Retroviral Gag ProteinsR01GM065056 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MUSIER-FORSYTH, KARIN M · 2002 to 2018
$4.9M
Single Molecule HIV-1 Replication InteractionsR01GM072462 · NIGMS · NORTHEASTERN UNIVERSITY · PI WILLIAMS, MARK C · 2004 to 2018
$3.9M
Role of TrpRS in tRNATrp Packaging in Avian RetrovirusesF32GM072396 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI STEWART MAYNARD, KRISTEN M · 2004 to 2006
$137k
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NIGMS NIH HHS F32 GM072396NIGMS NIH HHS GM065056NIGMS NIH HHS GM072396NIGMS NIH HHS GM072462NIGMS NIH HHS R01 GM065056NIGMS NIH HHS R01 GM072462
6 · The paper itself

Abstract

Retroviral nucleocapsid (NC) proteins are molecular chaperones that facilitate nucleic acid (NA) remodeling events critical in viral replication processes such as reverse transcription. Surprisingly, the NC protein from human T-cell leukemia virus type 1 (HTLV-1) is an extremely poor NA chaperone. Using bulk and single molecule methods, we find that removal of the anionic C-terminal domain (CTD) of HTLV-1 NC results in a protein with chaperone properties comparable with that of other retroviral NCs. Increasing the ionic strength of the solution also improves the chaperone activity of full-length HTLV-1 NC. To determine how the CTD negatively modulates the chaperone activity of HTLV-1 NC, we quantified the thermodynamics and kinetics of wild-type and mutant HTLV-1 NC/NA interactions. The wild-type protein exhibits very slow dissociation kinetics, and removal of the CTD or mutations that eliminate acidic residues dramatically increase the protein/DNA interaction kinetics. Taken together, these results suggest that the anionic CTD interacts with the cationic N-terminal domain intramolecularly when HTLV-1 NC is not bound to nucleic acids, and similar interactions occur between neighboring molecules when NC is NA-bound. The intramolecular N-terminal domain-CTD attraction slows down the association of the HTLV-1 NC with NA, whereas the intermolecular interaction leads to multimerization of HTLV-1 NC on the NA. The latter inhibits both NA/NC aggregation and rapid protein dissociation from single-stranded DNA. These features make HTLV-1 NC a poor NA chaperone, despite its robust duplex destabilizing capability.

Indexed as

Static ElectricityAmino Acid SequenceBase SequenceDNA, ViralHuman T-lymphotropic virus 1KineticsMolecular ChaperonesMolecular Sequence DataMutant ProteinsMutationNucleic Acid ConformationNucleic Acid DenaturationNucleic Acid HeteroduplexesNucleic AcidsNucleocapsid ProteinsOsmolar ConcentrationDNA, ViralMolecular ChaperonesMutant ProteinsNucleic Acid HeteroduplexesNucleic AcidsNucleocapsid ProteinsRNA, ViralSodium ChlorideSolutions

Identifiers

PMID19887455
PMCPMC2804176
OpenAlexW2087231400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.