Evidence map›Paper›PMID 19884373›Full record

ArticleAntimicrobial agents and chemotherapy2010

Screening and quantification of the expression of antibiotic resistance genes in Acinetobacter baumannii with a microarray.

Sébastien Coyne, Ghislaine Guigon, Patrice Courvalin, Bruno Périchon

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 121 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. The Mechanism of Tigecycline Resistance inInternational journal of molecular sciences · 2023
    Article
  11. RND pumps across the genusMicrobial genomics · 2023
    Article
  12. Article
  13. Resistance mechanisms of tigecycline inFrontiers in cellular and infection microbiology · 2023
    Review
  14. Review
  15. Article
  16. Minocycline Susceptibility andInfection and drug resistance · 2022
    Article
  17. Evaluation the effect of ZnO nanoparticle derivedJournal of environmental health science & engineering · 2021
    Article
  18. Review
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sébastien CoyneInstitut Pasteur, Unité des Agents Antibactériens, 75724 Paris, Cedex 15, France.
Ghislaine Guigon
Patrice Courvalin
Bruno Périchon
Institut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An oligonucleotide-based DNA microarray was developed to evaluate expression of genes for efflux pumps in Acinetobacter baumannii and to detect acquired antibiotic resistance determinants. The microarray contained probes for 205 genes, including those for 47 efflux systems, 55 resistance determinants, and 35 housekeeping genes. The microarray was validated by comparative analysis of mutants overexpressing or deficient in the pumps relative to the parental strain. The performance of the microarray was also evaluated using in vitro single-step mutants obtained on various antibiotics. Overexpression, confirmed by quantitative reverse transcriptase PCR, of RND efflux pumps AdeABC, due to a G30D substitution in AdeS in a multidrug-resistant (MDR) strain obtained on gentamicin, and AdeIJK, in two mutants obtained on cefotaxime or tetracycline, was detected. A new efflux pump, AdeFGH, was found to be overexpressed in a mutant obtained on chloramphenicol. Study of MDR clinical isolates, including the AYE strain, whose entire sequence has been determined, indicated overexpression of AdeABC and of the chromosomally encoded cephalosporinase as well as the presence of several acquired resistance genes. The overexpressed and acquired determinants detected by the microarray could account for nearly the entire MDR phenotype of the isolates. The microarray is potentially useful for detection of resistance in A. baumannii and should allow detection of new efflux systems associated with antibiotic resistance.

Indexed as

Oligonucleotide Array Sequence AnalysisAcinetobacter baumanniiAnti-Bacterial AgentsDNA, BacterialDNA, ComplementaryDrug Resistance, BacterialDrug Resistance, Multiple, BacterialGenes, MDRMetals, HeavyMicrobial Sensitivity TestsMutationReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionRNA, BacterialAnti-Bacterial AgentsDNA, BacterialDNA, ComplementaryMetals, HeavyRNA, Bacterial

Identifiers

PMID19884373
PMCPMC2798560
OpenAlexW2115584178

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.