ArticleGenetics2010
High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing.
Article in Genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
34 citing papers in PubMed, 82 citations in OpenAlex.
- Paternal imprinting of dosage-effect defective1 contributes to seed weight xenia in maize.Nature communications · 2022Article
- Maize Brittle Stalk2-Like3, encoding a COBRA protein, functions in cell wall formation and carbohydrate partitioning.The Plant cell · 2021Article
- RNA Binding Motif Protein 48 Is Required for U12 Splicing and Maize Endosperm Differentiation.The Plant cell · 2019Article
- Pathogen Trojan Horse Delivers Bioactive Host Protein to Alter Maize Anther Cell Behavior in Situ.The Plant cell · 2018Article
- tGBS® genotyping-by-sequencing enables reliable genotyping of heterozygous loci.Nucleic acids research · 2017Article
- MaizeThe Plant cell · 2017Article
- Unbiased K-mer Analysis Reveals Changes in Copy Number of Highly Repetitive Sequences During Maize Domestication and Improvement.Scientific reports · 2017Article
- Toward Genomics-Based Breeding in C3 Cool-Season Perennial Grasses.Frontiers in plant science · 2017Review
- Bulked sample analysis in genetics, genomics and crop improvement.Plant biotechnology journal · 2016Review
- Maternal Gametophyte Effects on Seed Development in Maize.Genetics · 2016Article
- Parent-of-Origin-Effect rough endosperm Mutants in Maize.Genetics · 2016Article
- The first genetic linkage map of Primulina eburnea (Gesneriaceae) based on EST-derived SNP markers.Journal of genetics · 2016Article
- Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines.BMC genomics · 2016Article
- An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize.BMC genomics · 2015Article
- The Axial Element Protein DESYNAPTIC2 Mediates Meiotic Double-Strand Break Formation and Synaptonemal Complex Assembly in Maize.The Plant cell · 2015Article
- The naked endosperm genes encode duplicate INDETERMINATE domain transcription factors required for maize endosperm cell patterning and differentiation.Plant physiology · 2015Article
- Positional cloning in maize (Zea mays subsp. mays, Poaceae).Applications in plant sciences · 2015Article
- Using next-generation sequencing to isolate mutant genes from forward genetic screens.Nature reviews. Genetics · 2014Review
- Transport of boron by the tassel-less1 aquaporin is critical for vegetative and reproductive development in maize.The Plant cell · 2014Article
- The boron efflux transporter ROTTEN EAR is required for maize inflorescence development and fertility.The Plant cell · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors at 6 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Advances in next-generation sequencing technology have facilitated the discovery of single nucleotide polymorphisms (SNPs). Sequenom-based SNP-typing assays were developed for 1359 maize SNPs identified via comparative next-generation transcriptomic sequencing. Approximately 75% of these SNPs were successfully converted into genetic markers that can be scored reliably and used to generate a SNP-based genetic map by genotyping recombinant inbred lines from the intermated B73 x Mo17 population. The quantitative nature of Sequenom-based SNP assays led to the development of a time- and cost-efficient strategy to genetically map mutants via quantitative bulked segregant analysis. This strategy was used to rapidly map the loci associated with several dozen recessive mutants. Because a mutant can be mapped using as few as eight multiplexed sets of SNP assays on a bulk of as few as 20 mutant F(2) individuals, this strategy is expected to be widely adopted for mapping in many species.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.