ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2009
A Brassica rapa linkage map of EST-based SNP markers for identification of candidate genes controlling flowering time and leaf morphological traits.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.
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55 citing papers in PubMed, 140 citations in OpenAlex.
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- Fine mapping and analysis of candidate genes for qFT7.1, a major quantitative trait locus controlling flowering time in Brassica rapa L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- BrWAX2 plays an essential role in cuticular wax biosynthesis in Chinese cabbage (Brassica rapa L. ssp. pekinensis).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- A premature stop codon in BrFLC2 transcript results in early flowering in oilseed-type Brassica rapa plants.Plant molecular biology · 2022Article
- Insight into the effect of low temperature treatment on trichome density and related differentially expressed genes in Chinese cabbage.PloS one · 2022Article
- Combination of genetic analysis and ancient literature survey reveals the divergence of traditional Brassica rapa varieties from Kyoto, Japan.Horticulture research · 2021Article
- Multivariate genome-wide association study of leaf shape in a Populus deltoides and P. simonii F1 pedigree.PloS one · 2021Article
- An Insertion Mutation inFrontiers in plant science · 2020Article
- Genome Triplication Leads to Transcriptional Divergence ofFrontiers in plant science · 2020Review
- Quantitative Trait Locus Mapping and Identification of Candidate Genes Controlling Flowering Time inFrontiers in plant science · 2020Article
- The role of FRIGIDA and FLOWERING LOCUS C genes in flowering time of Brassica rapa leafy vegetables.Scientific reports · 2019Article
- Transcriptomic analysis of contrasting inbred lines and FGenes & genomics · 2019Article
- High-resolution mapping of quantitative trait loci controlling main floral stalk length in Chinese cabbage (Brassica rapa L. ssp. pekinensis).BMC genomics · 2019Article
- Complex Horticultural Quality Traits in Broccoli Are Illuminated by Evaluation of the Immortal BolTBDH Mapping Population.Frontiers in plant science · 2019Article
- Genome re-sequencing, SNP analysis, and genetic mapping of the parental lines of a commercial FBreeding science · 2018Article
- Integrated analysis of leaf morphological and color traits in different populations of Chinese cabbage (Brassica rapa ssp. pekinensis).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- A GLABRA1 ortholog on LG A9 controls trichome number in the Japanese leafy vegetables Mizuna and Mibuna (Brassica rapa L. subsp. nipposinica L. H. Bailey): evidence from QTL analysis.Journal of plant research · 2017Article
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4 authors at 1 institution in 1 country.
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Abstract
For identification of genes responsible for varietal differences in flowering time and leaf morphological traits, we constructed a linkage map of Brassica rapa DNA markers including 170 EST-based markers, 12 SSR markers, and 59 BAC sequence-based markers, of which 151 are single nucleotide polymorphism (SNP) markers. By BLASTN, 223 markers were shown to have homologous regions in Arabidopsis thaliana, and these homologous loci covered nearly the whole genome of A. thaliana. Synteny analysis between B. rapa and A. thaliana revealed 33 large syntenic regions. Three quantitative trait loci (QTLs) for flowering time were detected. BrFLC1 and BrFLC2 were linked to the QTLs for bolting time, budding time, and flowering time. Three SNPs in the promoter, which may be the cause of low expression of BrFLC2 in the early-flowering parental line, were identified. For leaf lobe depth and leaf hairiness, one major QTL corresponding to a syntenic region containing GIBBERELLIN 20 OXIDASE 3 and one major QTL containing BrGL1, respectively, were detected. Analysis of nucleotide sequences and expression of these genes suggested possible involvement of these genes in leaf morphological traits.
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