Evidence map›Paper›PMID 19883620›Full record

ArticleCell metabolism2009

C. elegans major fats are stored in vesicles distinct from lysosome-related organelles.

Eyleen J O'Rourke, Alexander A Soukas, Christopher E Carr, Gary Ruvkun

Open access · bronzeAbstract read
In one paragraph

Article in Cell metabolism, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 286 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
286citing papers in PubMed, 2 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

286 citing papers in PubMed, 2 syntheses or guidelines pooled it, 474 citations in OpenAlex.

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  9. bioRxiv : the preprint server for biology · 2026
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  14. Microorganisms · 2026
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226 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Eyleen J O'RourkeDepartment of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA.
Alexander A Soukas
Christopher E Carr
Gary Ruvkun
Harvard University · US

Funding

Genomic analysis of C. elegans fat regulatory pathwaysR01DK070147 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RUVKUN, GARY B · 2004 to 2012
$3.6M
Conserved Mechanisms of Lipid Homeostasis in C. elegansR00DK087928 · NIDDK · UNIVERSITY OF VIRGINIA · PI O'ROURKE, EYLEEN JORGELINA · 2013 to 2015
$730k
Conserved Mechanisms of Lipid Homeostasis in C. elegansK99DK087928 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI O'ROURKE, EYLEEN JORGELINA · 2010 to 2011
$180k
Obesity and diabetes genetics and therapeutics in Caenorhabditis elegans.F32DK080607 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI SOUKAS, ALEXANDER A · 2007 to 2009
$151k
NIDDK NIH HHS F32 DK080607NIDDK NIH HHS F32DK080607NIDDK NIH HHS K99 DK087928NIDDK NIH HHS R00 DK087928NIDDK NIH HHS R01 DK070147NIDDK NIH HHS R01DK070147
6 · The paper itself

Abstract

Genetic conservation allows ancient features of fat storage endocrine pathways to be explored in C. elegans. Multiple studies have used Nile red or BODIPY-labeled fatty acids to identify regulators of fat mass. When mixed with their food, E. coli bacteria, Nile red, and BODIPY-labeled fatty acids stain multiple spherical cellular structures in the C. elegans major fat storage organ, the intestine. However, here we demonstrate that, in the conditions previously reported, the lysosome-related organelles stained by Nile red and BODIPY-labeled fatty acids are not the C. elegans major fat storage compartment. We show that the major fat stores are contained in a distinct cellular compartment that is not stained by Nile red. Using biochemical assays, we validate oil red O staining as a method to assess major fat stores in C. elegans, allowing for efficient and accurate genetic and functional genomic screens for genes that control fat accumulation at the organismal level.

Indexed as

AnimalsAzo CompoundsBoron CompoundsCaenorhabditis elegansCytoplasmic VesiclesFatsFluorescent DyesOxazinesStaining and Labeling4,4-difluoro-4-bora-3a,4a-diaza-s-indaceneAzo CompoundsBoron CompoundsFatsFluorescent Dyesnile redoil red OOxazines

Identifiers

PMID19883620
PMCPMC2921818
OpenAlexW2084043096

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.