Evidence map›Paper›PMID 19883097›Full record

ArticleThe journal of physical chemistry. B2009

pH-dependent association of proteins. The test case of monoclonal antibody HyHEL-5 and its antigen hen egg white lysozyme.

Maciej Długosz, Jan M Antosiewicz, Joanna Trylska

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 91% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Maciej DługoszInterdisciplinary Centre for Mathematical and Computational Modelling, University of Warsaw, Zwirki i Wigury 93, Warsaw 02-089, Poland. mdlugosz@icm.edu.pl
Jan M Antosiewicz
Joanna Trylska
University of Warsaw · PL

Funding

ASSOCIATION OF ELONGATION FACTORS AND ANTIBIOTICS WITH THE RIBOSOMER03TW007318 · FIC · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MCCAMMON, JAMES ANDREW · 2007 to 2009
$108k
FIC NIH HHS R03 TW007318FIC NIH HHS R03 TW07318
6 · The paper itself

Abstract

We describe a method for determining diffusion-controlled rate constants for protein-protein association that explicitly includes the solution pH. The method combines the transient-complex theory for computing electrostatically enhanced association rates with an approach based on a rigorous thermodynamic cycle and partition functions for energy levels characterizing protonation states of associating proteins and their complexes. To test our method, we determine the pH-dependent kinetics of association of the HyHEL-5 antibody with its antigen hen egg white lysozyme. It was shown experimentally that their association rate constant depends on pH, increasing linearly in the pH range 6-8 and saturating or even exhibiting a flat maximum in the pH range 8-10. The presented methodology leads to a qualitative agreement with the experimental data. Our approach allows one to study diffusion-controlled protein-protein association under different pH conditions by taking into account the ensembles of protonation states rather than just the most probable protonation state of each protein.

Indexed as

AnimalsAntibodies, MonoclonalChickensHydrogen-Ion ConcentrationKineticsMuramidaseProtein BindingStatic ElectricityThermodynamicsAntibodies, Monoclonalhen egg lysozymeMuramidase

Identifiers

PMID19883097
PMCPMC2802180
OpenAlexW1992295771

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.