Evidence map›Paper›PMID 19882667›Full record

ArticleGenesis (New York, N.Y. : 2000)2009

Textpresso site-specific recombinases: A text-mining server for the recombinase literature including Cre mice and conditional alleles.

William M Urbanski, Brian G Condie

Abstract read
In one paragraph

Article in Genesis (New York, N.Y. : 2000), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

William M UrbanskiDepartment of Genetics, Developmental Biology Group, University of Georgia, Athens, Georgia, USA.
Brian G Condie
University of Georgia · US

Funding

A new site specific recombinase for mammalian genome engineeringR21MH082360 · NIMH · UNIVERSITY OF GEORGIA · PI CONDIE, BRIAN G · 2008 to 2009
$365k
NIMH NIH HHS R21 MH082360
6 · The paper itself

Abstract

Textpresso Site Specific Recombinases (http://ssrc.genetics.uga.edu/) is a text-mining web server for searching a database of more than 9,000 full-text publications. The papers and abstracts in this database represent a wide range of topics related to site-specific recombinase (SSR) research tools. Included in the database are most of the papers that report the characterization or use of mouse strains that express Cre recombinase as well as papers that describe or analyze mouse lines that carry conditional (floxed) alleles or SSR-activated transgenes/knockins. The database also includes reports describing SSR-based cloning methods such as the Gateway or the Creator systems, papers reporting the development or use of SSR-based tools in systems such as Drosophila, bacteria, parasites, stem cells, yeast, plants, zebrafish, and Xenopus as well as publications that describe the biochemistry, genetics, or molecular structure of the SSRs themselves. Textpresso Site Specific Recombinases is the only comprehensive text-mining resource available for the literature describing the biology and technical applications of SSRs.

Indexed as

AllelesDatabases, FactualAnimalsDNA NucleotidyltransferasesInformation Storage and RetrievalIntegrasesInternetMiceMice, KnockoutMice, TransgenicPeriodicals as TopicCre recombinaseDNA NucleotidyltransferasesIntegrasesSite-specific recombinase

Identifiers

PMID19882667
PMCPMC4963979
OpenAlexW2034473480

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.