Evidence map›Paper›PMID 19880879›Full record

ArticleThe Journal of biological chemistry2010

ASXL1 represses retinoic acid receptor-mediated transcription through associating with HP1 and LSD1.

Sang-Wang Lee, Yang-Sook Cho, Jung-Min Na, Ui-Hyun Park, Myengmo Kang, Eun-Joo Kim, Soo-Jong Um

RetractedOpen access · hybridAbstract readRetracted Publication
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Article
  3. Familial hematological malignancies: ASXL1 gene investigation.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2016
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  4. Review
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  13. The JAK2 gene as a protagonist in chronic myeloproliferative neoplasms.Revista brasileira de hematologia e hemoterapia · 2013
    Article
  14. Article
  15. Article
  16. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sang-Wang LeeDepartment of Bioscience and Biotechnology, Sejong University, Kwangjin-gu, Seoul 143-747, Korea.
Yang-Sook Cho
Jung-Min Na
Ui-Hyun Park
Myengmo Kang
Eun-Joo Kim
Soo-Jong Um
Sejong University · KRDankook University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We previously suggested that ASXL1 (additional sex comb-like 1) functions as either a coactivator or corepressor for the retinoid receptors retinoic acid receptor (RAR) and retinoid X receptor in a cell type-specific manner. Here, we provide clues toward the mechanism underlying ASXL1-mediated repression. Transfection assays in HEK293 or H1299 cells indicated that ASXL1 alone possessing autonomous transcriptional repression activity significantly represses RAR- or retinoid X receptor-dependent transcriptional activation, and the N-terminal portion of ASXL1 is responsible for the repression. Amino acid sequence analysis identified a consensus HP1 (heterochromatin protein 1)-binding site (HP1 box, PXVXL) in that region. Systematic in vitro and in vivo assays revealed that the HP1 box in ASXL1 is critical for the interaction with the chromoshadow domain of HP1. Transcription assays with HP1 box deletion or HP1alpha knockdown indicated that HP1alpha is required for ASXL1-mediated repression. Furthermore, we found a direct interaction of ASXL1 with histone H3 demethylase LSD1 through the N-terminal region nearby the HP1-binding site. ASXL1 binding to LSD1 was greatly increased by HP1alpha, resulting in the formation of a ternary complex. LSD1 cooperates with ASXL1 in transcriptional repression, presumably by removing H3K4 methylation, an active histone mark, but not H3K9 methylation, a repressive histone mark recognized by HP1. This possibility was supported by chromatin immunoprecipitation assays followed by ASXL1 overexpression or knockdown. Overall, this study provides the first evidence that ASXL1 cooperates with HP1 to modulate LSD1 activity, leading to a change in histone H3 methylation and thereby RAR repression.

Indexed as

Transcription, GeneticAmino Acid SequenceBinding SitesCell LineChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneCo-Repressor ProteinsHistone DemethylasesHistonesHumansLigandsMethylationMolecular Sequence DataMultiprotein ComplexesPromoter Regions, GeneticProtein BindingASXL1 protein, humanCBX5 protein, humanChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneCo-Repressor ProteinsHistone DemethylasesHistonesKDM1A protein, humanLigandsMultiprotein ComplexesReceptors, Retinoic AcidRepressor Proteinsretinoic acid receptor, beta2, humanTretinoin

Identifiers

PMID19880879
PMCPMC2804164
OpenAlexW2061653945

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.