Evidence map›Paper›PMID 19879883›Full record

ArticleMutation research2010

Nucleotide excision repair genes are expressed at low levels and are not detectably inducible in Caenorhabditis elegans somatic tissues, but their function is required for normal adult life after UVC exposure.

Windy A Boyd, Tracey L Crocker, Ana M Rodriguez, Maxwell C K Leung, D Wade Lehmann, Jonathan H Freedman, Ben Van Houten, Joel N Meyer

Abstract read
In one paragraph

Article in Mutation research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 61 citations in OpenAlex.

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  12. PCR-Based Determination of Mitochondrial DNA Copy Number in Multiple Species.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
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  15. Genetic and cellular sensitivity ofDisease models & mechanisms · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Windy A BoydBiomolecular Screening Branch, National Toxicology Program, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC, USA.
Tracey L Crocker
Ana M Rodriguez
Maxwell C K Leung
D Wade Lehmann
Jonathan H Freedman
Ben Van Houten
Joel N Meyer
Duke University · USNational Institute of Environmental Health Sciences · USNational Institutes of Health · US

Funding

Zebrafish as a Detector of Organophosphate ExposureP42ES010356 · NIEHS · DUKE UNIVERSITY · PI EDWARD D LEVIN · 2000 to 2026
$56.2M
Comparative Genomic Responses to Environmental StressorsZIAES102045 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI FREEDMAN, JONATHAN H · 2009 to 2014
$6.9M
Intramural NIH HHSNIEHS NIH HHS P42 ES010356NIEHS NIH HHS P42 ES10356
6 · The paper itself

Abstract

We performed experiments to characterize the inducibility of nucleotide excision repair (NER) in Caenorhabditis elegans, and to examine global gene expression in NER-deficient and -proficient strains as well as germline vs. somatic tissues, with and without genotoxic stress. We also carried out experiments to elucidate the importance of NER in the adult life of C. elegans under genotoxin-stressed and control conditions. Adult lifespan was not detectably different between wild-type and NER-deficient xpa-1 nematodes under control conditions. However, exposure to 6J/m(2)/day of ultraviolet C radiation (UVC) decreased lifespan in xpa-1 nematodes more than a dose of 100 J/m(2)/day in wild-type. Similar differential sensitivities were observed for adult size and feeding. Remarkably, global gene expression was nearly identical in young adult wild-type and xpa-1 nematodes, both in control conditions and 3h after exposure to 50 J/m(2) UVC. Neither NER genes nor repair activity were detectably inducible in young adults that lacked germ cells and developing embryos (glp-1 strain). However, expression levels of dozens of NER and other DNA damage response genes were much (5-30-fold) lower in adults lacking germ cells and developing embryos, suggesting that somatic and post-mitotic cells have a much lower DNA repair ability. Finally, we describe a refinement of our DNA damage assay that allows damage measurement in single nematodes.

Indexed as

AnimalsBiomarkersCaenorhabditis elegansCaenorhabditis elegans ProteinsDNA RepairDNA Repair EnzymesGene Expression ProfilingGene Expression RegulationGerm CellsGlucagon-Like Peptide 1Hot TemperatureOligonucleotide Array Sequence AnalysisPolymerase Chain ReactionReproductionSurvival RateUltraviolet RaysBiomarkersCaenorhabditis elegans ProteinsDNA Repair EnzymesGlucagon-Like Peptide 1Xeroderma Pigmentosum Group A Protein

Identifiers

PMID19879883
PMCPMC2799044
OpenAlexW1987010975

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.