Evidence map›Paper›PMID 19879710›Full record

ArticleDiagnostic microbiology and infectious disease2010

Development of a microarray for identification of pathogenic Clostridium spp.

Tavan Janvilisri, Joy Scaria, Robin Gleed, Susan Fubini, Michelle M Bonkosky, Yrjö T Gröhn, Yung-Fu Chang

Abstract readEvaluation Study
In one paragraph

Article in Diagnostic microbiology and infectious disease, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Prevalence and antimicrobial resistance patterns ofOne health (Amsterdam, Netherlands) · 2025
    Article
  3. The human gut resistome.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tavan JanvilisriDepartment of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, NY 14853, USA.
Joy Scaria
Robin Gleed
Susan Fubini
Michelle M Bonkosky
Yrjö T Gröhn
Yung-Fu Chang

Funding

FOOD &WATERBORNE DISEASES INTEGRATED RESEARCH NETWORK, ZOONOES RESEAR-N01AI030054 · NIAID · CORNELL UNIVERSITY · 2003 to 2003
–
NIAID NIH HHS N01 AI030054
6 · The paper itself

Abstract

In recent years, Clostridium spp. have rapidly reemerged as human and animal pathogens. The detection and identification of pathogenic Clostridium spp. is therefore critical for clinical diagnosis and antimicrobial therapy. Traditional diagnostic techniques for clostridia are laborious, are time consuming, and may adversely affect the therapeutic outcome. In this study, we developed an oligonucleotide diagnostic microarray for pathogenic Clostridium spp. The microarray specificity was tested against 65 Clostridium isolates. The applicability of this microarray in a clinical setting was assessed with the use of mock stool samples. The microarray was successful in discriminating at least 4 species with the limit of detection as low as 10(4) CFU/mL. In addition, the pattern of virulence and antibiotic resistance genes of tested strains were determined through the microarrays. This approach demonstrates the high-throughput detection and identification of Clostridium spp. and provides advantages over traditional methods. Microarray-based techniques are promising applications for clinical diagnosis and epidemiologic investigations.

Indexed as

Bacterial ProteinsClinical Laboratory TechniquesClostridiumClostridium InfectionsDNA, BacterialDrug Resistance, BacterialFecesHumansMicroarray AnalysisOligonucleotide Array Sequence AnalysisSensitivity and SpecificityVirulence FactorsBacterial ProteinsDNA, BacterialVirulence Factors

Identifiers

PMID19879710
PMCPMC2815050

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.