Evidence map›Paper›PMID 19876630›Full record

ArticleCurrent genetics2009

Agrobacterium-tumefaciens-mediated transformation of antifungal-lipopeptide-producing fungus Coleophoma empetri F-11899.

Masato Yamada, Kazunobu Yawata, Yohsuke Orino, Satoshi Ueda, Yasuhiro Isogai, Goro Taguchi, Makoto Shimosaka, Seiji Hashimoto

Abstract read
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In one paragraph

Article in Current genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.1field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. T-DNA insertion mutagenesis inMicrobiology (Reading, England) · 2023
    Article
  3. Article
  4. Article
  5. Rhf1 gene is involved in the fruiting body production of Cordyceps militaris fungus.Journal of industrial microbiology & biotechnology · 2015
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Masato YamadaDepartment of Biotechnology, Faculty of Engineering, Toyama Prefectural University, Imizu, Toyama, Japan. myamada@pu-toyama.ac.jp
Kazunobu Yawata
Yohsuke Orino
Satoshi Ueda
Yasuhiro Isogai
Goro Taguchi
Makoto Shimosaka
Seiji Hashimoto
Toyama Prefectural University · JPShinshu University · JPAstellas Pharma (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The filamentous fungus Coleophoma empetri F-11899 produces an echinocandin-like compound FR901379, the original source for micafungin which is prescribed to treat deep-seated mycoses. Despite its industrial importance, no genetic information on C. empetri F-11899 is currently available. To characterize FR901379 biosynthetic genes by insertional mutagenesis and to improve the compound production genetically, Agrobacterium tumefaciens-mediated transformation (ATMT) was attempted to make genetic manipulation possible in this strain. The optimum conditions for ATMT of C. empetri were determined for the cell density of bacteria, time period of co-cultivation and types of filters in co-cultivation. Using the established ATMT method, the hygromycin B resistant gene was successfully transferred into the genome of C. empetri F-11899 and stably maintained even after a serial passage. Some of these results will be applicable for ATMT of various filamentous fungi.

Indexed as

Genes, FungalTransformation, GeneticAgrobacterium tumefaciensAntifungal AgentsDNA, FungalEscherichia coli ProteinsFungal ProteinsGenetic VectorsHygromycin BMutagenesis, InsertionalMycologyPeptides, CyclicPhosphotransferases (Alcohol Group Acceptor)SaccharomycetalesAntifungal AgentsDNA, FungalEscherichia coli ProteinsFR 901379Fungal ProteinsHygromycin Bhygromycin-B kinasePeptides, CyclicPhosphotransferases (Alcohol Group Acceptor)

Identifiers

PMID19876630
OpenAlexW2085425440

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.