Evidence map›Paper›PMID 19875082›Full record

ArticleChemistry & biology2009

Identification of distinct thiopeptide-antibiotic precursor lead compounds using translation machinery assays.

Agata L Starosta, Haiou Qin, Aleksandra Mikolajka, Gulice Y C Leung, Kathrin Schwinghammer, Kyriacos C Nicolaou, David Y-K Chen, Barry S Cooperman, Daniel N Wilson

Open access · greenAbstract read
In one paragraph

Article in Chemistry & biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Cryo-EM structure of the tetracycline resistance protein TetM in complex with a translating ribosome at 3.9-Å resolution.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  3. Structural basis and dynamics of multidrug recognition in a minimal bacterial multidrug resistance system.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  4. Article
  5. The bacterial translation stress response.FEMS microbiology reviews · 2014
    Review
  6. Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Agata L StarostaGene Center and Department of Chemistry and Biochemistry, Ludwig-Maximilians University of Munich, Feodor Lynen Strasse 25, 81377 Munich, Germany.
Haiou Qin
Aleksandra Mikolajka
Gulice Y C Leung
Kathrin Schwinghammer
Kyriacos C Nicolaou
David Y-K Chen
Barry S Cooperman
Daniel N Wilson
Center for Integrated Protein Science Munich · DEAgency for Science, Technology and Research · SGUniversity of Pennsylvania · US

Funding

Dynamics of Ribosomal Protein SynthesisR01GM071014 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI COOPERMAN, BARRY S. · 2004 to 2011
$2.5M
NIGMS NIH HHS GM071014NIGMS NIH HHS R01 GM071014
6 · The paper itself

Abstract

Most thiopeptide antibiotics target the translational machinery: thiostrepton (ThS) and nosiheptide (NoS) target the ribosome and inhibit translation factor function, whereas GE2270A/T binds to the elongation factor EF-Tu and prevents ternary complex formation. We have used several in vitro translational machinery assays to screen a library of thiopeptide antibiotic precursor compounds and identified four families of precursor compounds that are either themselves inhibitory or are able to relieve the inhibitory effects of ThS, NoS, or GE2270T. Some of these precursors represent distinct compounds with respect to their ability to bind to ribosomes. The results not only provide insight into the mechanism of action of thiopeptide compounds but also demonstrate the potential of such assays for identifying lead compounds that might be missed using conventional inhibitory screening protocols.

Indexed as

Anti-Bacterial AgentsBinding SitesGTP PhosphohydrolasesPeptide Elongation Factor TuPeptides, CyclicProdrugsProtein BiosynthesisRibosomesThiazolesThiostreptonAnti-Bacterial AgentsGE2270TGTP PhosphohydrolasesnosiheptidePeptide Elongation Factor TuPeptides, CyclicProdrugsThiazolesThiostrepton

Identifiers

PMID19875082
PMCPMC3117328
OpenAlexW2083274079

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.