Evidence map›Paper›PMID 19874856›Full record

ArticleMolecular and biochemical parasitology2010

Crystal structure of the aspartyl-tRNA synthetase from Entamoeba histolytica.

Ethan A Merritt, Tracy L Arakaki, Eric T Larson, Angela Kelley, Natascha Mueller, Alberto J Napuli, Li Zhang, George Deditta, Joseph Luft, Christophe L M J Verlinde and 5 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and biochemical parasitology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Emergence and evolution.Topics in current chemistry · 2014
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Ethan A MerrittDepartment of Biochemistry, University of Washington, Mailstop 357742, Seattle, WA 98195, USA. merritt@u.washington.edu
Tracy L Arakaki
Eric T Larson
Angela Kelley
Natascha Mueller
Alberto J Napuli
Li Zhang
George Deditta
Joseph Luft
Christophe L M J Verlinde
Erkang Fan
Frank Zucker
Frederick S Buckner
Wesley C Van Voorhis
Wim G J Hol
University of Washington · USHauptman-Woodward Medical Research Institute · US

Funding

Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
NIAID NIH HHS AI067921NIAID NIH HHS P01 AI067921
6 · The paper itself

Abstract

The crystal structure of the aspartyl-tRNA synthetase from the eukaryotic parasite Entamoeba histolytica has been determined at 2.8Aresolution. Relative to homologous sequences, the E. histolytica protein contains a 43-residue insertion between the N-terminal anticodon binding domain and the C-terminal catalytic domain. The present structure reveals that this insertion extends an arm of the hinge region that has previously been shown to mediate interaction of aspartyl-tRNA synthetase with the cognate tRNA D-stem. Modeling indicates that this Entamoeba-specific insertion is likely to increase the interaction surface with the cognate tRNA(Asp). In doing so it may substitute functionally for an RNA-binding motif located in N-terminal extensions found in AspRS sequences from lower eukaryotes but absent in Entamoeba. The E. histolytica AspRS structure shows a well-ordered N-terminus that contributes to the AspRS dimer interface.

Indexed as

Amino Acid SequenceAnimalsAspartate-tRNA LigaseCrystallography, X-RayEntamoeba histolyticaModels, MolecularMolecular Sequence DataProtein Structure, TertiaryProtozoan ProteinsSequence AlignmentAspartate-tRNA LigaseProtozoan Proteins

Identifiers

PMID19874856
PMCPMC2791181
OpenAlexW2078535282

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.