Evidence map›Paper›PMID 19874574›Full record

ArticleBMC biology2009

Genetical genomic determinants of alcohol consumption in rats and humans.

Boris Tabakoff, Laura Saba, Morton Printz, Pam Flodman, Colin Hodgkinson, David Goldman, George Koob, Heather N Richardson, Katerina Kechris, Richard L Bell and 12 more

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 2 pooled it
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 2 syntheses or guidelines pooled it, 158 citations in OpenAlex.

  1. Pooled it
  2. A New Genomewide Association Meta-Analysis of Alcohol Dependence.Alcoholism, clinical and experimental research · 2015
    Pooled it
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. Article

53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 13 institutions in 6 countries.

Boris TabakoffDepartment of Pharmacology, University of Colorado, Denver, Aurora, CO, USA. boris.tabakoff@ucdenver.edu
Laura Saba
Morton Printz
Pam Flodman
Colin Hodgkinson
David Goldman
George Koob
Heather N Richardson
Katerina Kechris
Richard L Bell
Norbert Hübner
Matthias Heinig
Michal Pravenec
Jonathan Mangion
Lucie Legault
Maurice Dongier
Katherine M Conigrave
John B Whitfield
John Saunders
Bridget Grant
Paula L Hoffman
WHO/ISBRA Study on State and Trait Markers of Alcoholism
Scripps Research Institute · USUniversity of Colorado Denver · USCzech Academy of Sciences · CZMax Delbrück Center · DENational Institute on Alcohol Abuse and Alcoholism · USThe University of Queensland · AUUniversity of California, Irvine · USColorado School of Public Health · USDaresbury Laboratory · GBMcGill University · CAQIMR Berghofer Medical Research Institute · AUThe University of Sydney · AUUniversity of California San Diego · US

Funding

Integrative genetics of behavior with high throughput technologiesZIAAA000301 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI GOLDMAN, DAVID · 2009 to 2025
$68.6M
Viral Vector CoreP60AA006420 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI ERIC P ZORRILLA · 2003 to 2026
$46.3M
National Epidemiologic Survey on Alcohol and Related Conditions (NESARC) - IIIZIAAA000449 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI GRANT, BRIDGET F · 2009 to 2016
$16.5M
UNIQUE CARDIOVASCULAR RESPONSE TO STRESSORS AND LINKAGE WITH HYPERTENSIONP01HL035018 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PRINTZ, MORTON P · 1986 to 2007
$14.7M
The Heritable Transcriptome and AlcoholismR24AA013162 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA, SABA, LAURA MAREN · 2001 to 2021
$14.2M
Integrative Neuroscience Initiative on Alcoholism - West - SupplementU01AA013517 · NIAAA · SCRIPPS RESEARCH INSTITUTE, THE · PI ROBERTO, MARISA · 2001 to 2014
$12.7M
Gene Array Technology Center for Alcohol ResearchR01AA013162 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI TABAKOFF, BORIS · 2002 to 2005
$5.8M
Rodents with Genetic Differences in Alcohol PreferenceR24AA015512 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2005 to 2014
$5.1M
SYSTEMIC NEUROPHARMACOLOGYP50AA006420 · NIAAA · SCRIPPS RESEARCH INSTITUTE · PI KOOB, GEORGE F · 1985 to 2002
$5.1M
Rat Animal Models Core (RAMC)U01AA013522 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2001 to 2014
$4.3M
Rodents with Genetic Differences in Alcohol PreferenceU24AA015512 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2015 to 2019
$2.7M
Regulation of alcohol consumption by chromatin modificationU01AA016649 · NIAAA · UNIVERSITY OF COLORADO DENVER · PI HOFFMAN, PAULA, TABAKOFF, BORIS · 2006 to 2013
$2.4M
Howard Hughes Medical InstituteNHLBI NIH HHS HL35018NHLBI NIH HHS P01 HL035018NIAAA NIH HHS AA006420NIAAA NIH HHS AA013162NIAAA NIH HHS AA013517-INIANIAAA NIH HHS AA013522-INIANIAAA NIH HHS AA016649-INIANIAAA NIH HHS AA016663-INIANIAAA NIH HHS AA16922NIAAA NIH HHS K01 AA016922NIAAA NIH HHS P50 AA006420NIAAA NIH HHS P60 AA006420NIAAA NIH HHS R01 AA013162NIAAA NIH HHS R24 AA013162NIAAA NIH HHS R24 AA015512NIAAA NIH HHS U01 AA013517NIAAA NIH HHS U01 AA013522NIAAA NIH HHS U01 AA016649NIAAA NIH HHS U01 AA016663NIAAA NIH HHS U24 AA013517NIAAA NIH HHS U24 AA013522NIAAA NIH HHS U24 AA015512Wellcome Trust
6 · The paper itself

Abstract

backgroundWe have used a genetical genomic approach, in conjunction with phenotypic analysis of alcohol consumption, to identify candidate genes that predispose to varying levels of alcohol intake by HXB/BXH recombinant inbred rat strains. In addition, in two populations of humans, we assessed genetic polymorphisms associated with alcohol consumption using a custom genotyping array for 1,350 single nucleotide polymorphisms (SNPs). Our goal was to ascertain whether our approach, which relies on statistical and informatics techniques, and non-human animal models of alcohol drinking behavior, could inform interpretation of genetic association studies with human populations.

resultsIn the HXB/BXH recombinant inbred (RI) rats, correlation analysis of brain gene expression levels with alcohol consumption in a two-bottle choice paradigm, and filtering based on behavioral and gene expression quantitative trait locus (QTL) analyses, generated a list of candidate genes. A literature-based, functional analysis of the interactions of the products of these candidate genes defined pathways linked to presynaptic GABA release, activation of dopamine neurons, and postsynaptic GABA receptor trafficking, in brain regions including the hypothalamus, ventral tegmentum and amygdala. The analysis also implicated energy metabolism and caloric intake control as potential influences on alcohol consumption by the recombinant inbred rats. In the human populations, polymorphisms in genes associated with GABA synthesis and GABA receptors, as well as genes related to dopaminergic transmission, were associated with alcohol consumption.

conclusionOur results emphasize the importance of the signaling pathways identified using the non-human animal models, rather than single gene products, in identifying factors responsible for complex traits such as alcohol consumption. The results suggest cross-species similarities in pathways that influence predisposition to consume alcohol by rats and humans. The importance of a well-defined phenotype is also illustrated. Our results also suggest that different genetic factors predispose alcohol dependence versus the phenotype of alcohol consumption.

Indexed as

GenomicsQuantitative Trait, HeritableAlcohol DrinkingAnimalsBrainBrain ChemistryDisease Models, AnimalEthanolFemaleFood PreferencesGene Expression ProfilingGenetic Predisposition to DiseaseHumansMaleMicroarray AnalysisPhenotypeEthanol

Identifiers

PMID19874574
PMCPMC2777866
OpenAlexW2111765237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.