Evidence map›Paper›PMID 19865084›Full record

ArticleNature2009

Crystal structure of a bacterial homologue of the kidney urea transporter.

Elena J Levin, Matthias Quick, Ming Zhou

Open access · greenAbstract read
In one paragraph

Article in Nature, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
8.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 123 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Urease promotes pH homeostasis and growth ofJournal of bacteriology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Transport Characteristics of Urea Transporters.Sub-cellular biochemistry · 2025
    Review
  11. Protein Structures of Urea Transporters.Sub-cellular biochemistry · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Non-Aquaporin Water Channels.Advances in experimental medicine and biology · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Elena J LevinDepartment of Physiology & Cellular Biophysics, College of Physicians and Surgeons, Columbia University, 630 West 168th Street, New York, New York 10032, USA.
Matthias Quick
Ming Zhou
Columbia University · US

Funding

Sub 9 at AECMU54GM075026 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI GOUAUX, JAMES E · 2005 to 2009
$16.8M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Structural mechanism of K channel modulation by cellular redox stateR01HL086392 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ZHOU, MING · 2006 to 2018
$3.9M
Multidisciplinary Training in Translational Cardiovascular ResearchT32HL087745 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MARKS, ANDREW ROBERT · 2007 to 2011
$1.8M
Structure and function of urea transportersR01DK088057 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ZHOU, MING · 2010 to 2014
$1.7M
NHLBI NIH HHS HL086392NHLBI NIH HHS R01 HL086392NHLBI NIH HHS T32 HL087745NHLBI NIH HHS T32HL087745NIBIB NIH HHS P30 EB009998NIDDK NIH HHS R01 DK088057NIGMS NIH HHS GM075026NIGMS NIH HHS U54 GM075026
6 · The paper itself

Abstract

Urea is highly concentrated in the mammalian kidney to produce the osmotic gradient necessary for water re-absorption. Free diffusion of urea across cell membranes is slow owing to its high polarity, and specialized urea transporters have evolved to achieve rapid and selective urea permeation. Here we present the 2.3 A structure of a functional urea transporter from the bacterium Desulfovibrio vulgaris. The transporter is a homotrimer, and each subunit contains a continuous membrane-spanning pore formed by the two homologous halves of the protein. The pore contains a constricted selectivity filter that can accommodate several dehydrated urea molecules in single file. Backbone and side-chain oxygen atoms provide continuous coordination of urea as it progresses through the filter, and well-placed alpha-helix dipoles provide further compensation for dehydration energy. These results establish that the urea transporter operates by a channel-like mechanism and reveal the physical and chemical basis of urea selectivity.

Indexed as

AnimalsBinding SitesCrystallography, X-RayDesulfovibrio vulgarisHumansKidneyMembrane Transport ProteinsModels, MolecularOocytesProtein FoldingProtein Structure, QuaternaryProtein SubunitsStructure-Activity RelationshipUreaUrea TransportersXenopus laevisMembrane Transport ProteinsProtein SubunitsUreaUrea Transporters

Identifiers

PMID19865084
PMCPMC2871279
OpenAlexW1967156736

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.