Evidence map›Paper›PMID 19864579›Full record

ArticleThe Journal of neuroscience : the official journal of the Society for Neuroscience2009

Differential gene expression in the developing lateral geniculate nucleus and medial geniculate nucleus reveals novel roles for Zic4 and Foxp2 in visual and auditory pathway development.

Sam Horng, Gabriel Kreiman, Charlene Ellsworth, Damon Page, Marissa Blank, Kathleen Millen, Mriganka Sur

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of neuroscience : the official journal of the Society for Neuroscience, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 51 citations in OpenAlex.

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  19. Ten-m2 is required for the generation of binocular visual circuits.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Sam HorngDepartment of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Gabriel Kreiman
Charlene Ellsworth
Damon Page
Marissa Blank
Kathleen Millen
Mriganka Sur
Massachusetts Institute of Technology · USUniversity of Chicago · USHarvard University · US

Funding

STRUCTURE AND FUNCTION IN THE RETINOGENICULATE PATHWAYR01EY007023 · NEI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI SUR, MRIGANKA · 1985 to 2018
$5.6M
Cortical Plasticity: Inputs, Networks and BehaviorR01EY015068 · NEI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SUR, MRIGANKA · 2003 to 2007
$1.8M
Molecular Mechanisms of Visual Thalamic DevelopmentF30NS057899 · NINDS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI HORNG, SAM H · 2007 to 2010
$131k
NEI NIH HHS R01 EY007023NEI NIH HHS R01EY007023NEI NIH HHS R01 EY015068NEI NIH HHS R01EY015068NINDS NIH HHS F30 NS057899NINDS NIH HHS F30NS057899
6 · The paper itself

Abstract

Primary sensory nuclei of the thalamus process and relay parallel channels of sensory input into the cortex. The developmental processes by which these nuclei acquire distinct functional roles are not well understood. To identify novel groups of genes with a potential role in differentiating two adjacent sensory nuclei, we performed a microarray screen comparing perinatal gene expression in the principal auditory relay nucleus, the medial geniculate nucleus (MGN), and principal visual relay nucleus, the lateral geniculate nucleus (LGN). We discovered and confirmed groups of highly ranked, differentially expressed genes with qRT-PCR and in situ hybridization. A functional role for Zic4, a transcription factor highly enriched in the LGN, was investigated using Zic4-null mice, which were found to have changes in topographic patterning of retinogeniculate projections. Foxp2, a transcriptional repressor expressed strongly in the MGN, was found to be positively regulated by activity in the MGN. These findings identify roles for two differentially expressed genes, Zic4 and Foxp2, in visual and auditory pathway development. Finally, to test whether modality-specific patterns of gene expression are influenced by extrinsic patterns of input, we performed an additional microarray screen comparing the normal MGN to "rewired" MGN, in which normal auditory afferents are ablated and novel retinal inputs innervate the MGN. Data from this screen indicate that rewired MGN acquires some patterns of gene expression that are present in the developing LGN, including an upregulation of Zic4 expression, as well as novel patterns of expression which may represent unique processes of cross-modal plasticity.

Indexed as

AnimalsAnimals, NewbornAuditory PathwaysForkhead Transcription FactorsGene ExpressionGeniculate BodiesHomeodomain ProteinsIn Situ HybridizationMiceMice, Inbred C57BLMice, KnockoutOligonucleotide Array Sequence AnalysisRepressor ProteinsRetinaReverse Transcriptase Polymerase Chain ReactionThalamusForkhead Transcription FactorsFoxp2 protein, mouseHomeodomain ProteinsRepressor ProteinsTranscription FactorsZic4 protein, mouse

Identifiers

PMID19864579
PMCPMC3395072
OpenAlexW2035162986

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.