Evidence map›Paper›PMID 19863810›Full record

ArticleBMC molecular biology2009

RAD51 paralogs promote homology-directed repair at diversifying immunoglobulin V regions.

Ellen C Ordinario, Munehisa Yabuki, Priya Handa, W Jason Cummings, Nancy Maizels

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Targeted gene therapies: tools, applications, optimization.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ellen C OrdinarioDepartment of Biochemistry, University of Washington School of Medicine, Seattle, WA 98195-7650, USA. ecordinario@lbl.gov
Munehisa Yabuki
Priya Handa
W Jason Cummings
Nancy Maizels
University of Washington · US

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
MECHANISMS OF SOMATIC MUTATION OF IMMUNOGLOBULIN GENESR01GM041712 · NIGMS · YALE UNIVERSITY · PI MAIZELS, NANCY · 1990 to 2011
$3.4M
Targeted Gene Repair by Homologous Recombination (Component 8 of 11)RL1GM084434 · NIGMS · UNIVERSITY OF WASHINGTON · PI MAIZELS, NANCY · 2007 to 2011
$2.0M
NIA NIH HHS T32 AG000057NIA NIH HHS T32 AG00057NIGMS NIH HHS R01 GM041712NIGMS NIH HHS RL1 GM084434NIGMS NIH HHS T32 GM007223NIGMS NIH HHS T32 GM07223
6 · The paper itself

Abstract

backgroundGene conversion depends upon the same factors that carry out more general process of homologous recombination, including homologous gene targeting and recombinational repair. Among these are the RAD51 paralogs, conserved factors related to the key recombination factor, RAD51. In chicken and other fowl, gene conversion (templated mutation) diversifies immunoglobulin variable region sequences. This allows gene conversion and recombinational repair to be studied using the chicken DT40 B cell line, which carries out constitutive gene conversion and provides a robust and physiological model for homology-directed repair in vertebrate cells.

resultsWe show that DT40 contains constitutive nuclear foci of the repair factors RAD51D and XRCC2, consistent with activated homologous recombination. Single-cell imaging of a DT40 derivative in which the rearranged and diversifying immunoglobulin lambdaR light chain gene is tagged with polymerized lactose operator, DT40 PolyLacO-lambdaR, showed that RAD51D and XRCC2 localize to the diversifying lambdaR gene. Colocalizations correlate both functionally and physically with active immunoglobulin gene conversion. Ectopic expression of either RAD51D or XRCC2 accelerated the clonal rate of gene conversion, and conversion tracts were significantly longer in RAD51D than XRCC2 transfectants.

conclusionThese results demonstrate direct functions of RAD51D and XRCC2 in immunoglobulin gene conversion, and also suggest that modulation of levels of repair factors may be a useful strategy to promote gene correction in other cell types.

Indexed as

DNA RepairGenetic VariationSequence Homology, Amino AcidAICDA (Activation-Induced Cytidine Deaminase)AllelesAnimalsB-LymphocytesCell LineCell NucleusChickensCytidine DeaminaseDNA-Binding ProteinsDNA DamageGene ConversionGreen Fluorescent ProteinsHumansAICDA (Activation-Induced Cytidine Deaminase)Cytidine DeaminaseDNA-Binding ProteinsGreen Fluorescent ProteinsImmunoglobulin Light ChainsImmunoglobulin Variable RegionRad51 RecombinaseRecombinant Fusion Proteins

Identifiers

PMID19863810
PMCPMC2774322
OpenAlexW2147067301

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.