Evidence map›Paper›PMID 19862823›Full record

ArticleGenes, chromosomes & cancer2010

Distinct MHC gene expression patterns during progression of melanoma.

Yan Degenhardt, Jia Huang, Joel Greshock, Galene Horiates, Katherine Nathanson, Xiaolu Yang, Meenhard Herlyn, Barbara Weber

Abstract read
In one paragraph

Article in Genes, chromosomes & cancer, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. The Transcriptional Landscape ofInternational journal of molecular sciences · 2022
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  3. Article
  4. Article
  5. Review
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  7. Review
  8. Article
  9. Article
  10. Review
  11. CD4 and CD8 T lymphocyte interplay in controlling tumor growth.Cellular and molecular life sciences : CMLS · 2018
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Metastatic melanoma cells evade immune detection by silencing STAT1.International journal of molecular sciences · 2015
    Article
  17. Article
  18. Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus.Mammalian genome : official journal of the International Mammalian Genome Society · 2012
    Article
  19. From melanocyte to metastatic malignant melanoma.Dermatology research and practice · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 2 countries.

Yan DegenhardtCancer Metabolism DPU, Oncology, GlaxoSmithKline, King of Prussia, PA 19406, USA. yan.y.degenhardt@gsk.com
Jia Huang
Joel Greshock
Galene Horiates
Katherine Nathanson
Xiaolu Yang
Meenhard Herlyn
Barbara Weber
GlaxoSmithKline (United States) · USBoston Biomedical Research Institute · USCancer Research Institute · USGlaxoSmithKline (United Kingdom) · GBThe Wistar Institute · USUniversity of Miami · USUniversity of Pennsylvania · US

Funding

Tissue &PathologyP50CA093372 · NCI · WISTAR INSTITUTE · PI HERLYN, MEENHARD F · 2001 to 2009
$15.4M
Somatic genetic predictors of response to therapy in metastatic melanomaR01CA118871 · NCI · UNIVERSITY OF PENNSYLVANIA · PI NATHANSON, KATHERINE L. · 2007 to 2011
$1.5M
NCI NIH HHS P50 CA093372NCI NIH HHS R01 CA118871
6 · The paper itself

Abstract

Abnormal expression of major histocompatibility complex (MHC) molecules in melanoma has been reported previously. However, the MHC molecule expression patterns in different growth phases of melanoma and the underlying mechanisms are not well understood. Here, we demonstrate that in vertical growth phase (VGP) melanomas, MHC genes are subject to increased rates of DNA copy number gains, accompanied by increased expression, in comparison to normal melanocytes. In contrast, MHC expression in metastatic melanomas drastically decreased compared to VGP melanomas, despite still prevalent DNA copy number gains. Subsequent investigations found that the master transactivator of MHC genes, CIITA, was also significantly downregulated in metastatic melanomas when compared to VGP melanomas. This could be one of the mechanisms accounting for the discrepancy between DNA copy number and expression level in metastatic melanomas, a potentially separate mechanism of gene regulation. These results infer a dynamic role of MHC function in melanoma progression. We propose potential mechanisms for the overexpression of MHC molecules in earlier stages of melanoma as well as for its downregulation in metastatic melanomas.

Indexed as

Gene Expression Regulation, NeoplasticAntigens, Differentiation, B-LymphocyteBlotting, WesternCell Culture TechniquesCell Line, TumorDisease ProgressionDNA PrimersDown-RegulationGene AmplificationHistocompatibility Antigens Class IIHumansMajor Histocompatibility ComplexMelanocytesMelanomaNeoplasm MetastasisOligonucleotide Array Sequence AnalysisAntigens, Differentiation, B-LymphocyteDNA PrimersHistocompatibility Antigens Class IIinvariant chain

Identifiers

PMID19862823
PMCPMC2796267
OpenAlexW2115375769

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.