Evidence map›Paper›PMID 19861413›Full record

ArticleThe Journal of biological chemistry2009

Mapping of disulfide bonds within the amino-terminal extracellular domain of the inhibitory glycine receptor.

Nicolas Vogel, Christoph J Kluck, Nima Melzer, Stephan Schwarzinger, Ulrike Breitinger, Silke Seeber, Cord-Michael Becker

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Dynamics and Interplay of the Binding Pockets in the Glycine Receptor.Journal of chemical information and modeling · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Proteomic approaches and identification of novel therapeutic targets for alcoholism.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2014
    Review
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Nicolas VogelInstitut für Biochemie, Emil-Fischer-Zentrum, Universität Erlangen-Nürnberg, Erlangen 91054.
Christoph J KluckInstitut für Biochemie, Emil-Fischer-Zentrum, Universität Erlangen-Nürnberg, Erlangen 91054.
Nima MelzerInstitut für Biochemie, Emil-Fischer-Zentrum, Universität Erlangen-Nürnberg, Erlangen 91054.
Stephan SchwarzingerLehrstuhl für Biopolymere, Universität Bayreuth, Bayreuth 95440, Germany.
Ulrike BreitingerInstitut für Biochemie, Emil-Fischer-Zentrum, Universität Erlangen-Nürnberg, Erlangen 91054.
Silke SeeberInstitut für Biochemie, Emil-Fischer-Zentrum, Universität Erlangen-Nürnberg, Erlangen 91054.
Cord-Michael BeckerInstitut für Biochemie, Emil-Fischer-Zentrum, Universität Erlangen-Nürnberg, Erlangen 91054. Electronic address: cmb@biochem.uni-erlangen.de.
Friedrich-Alexander-Universität Erlangen-Nürnberg · DEUniversity of Bayreuth · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The strychnine-sensitive glycine receptor (GlyR) is a ligand-gated chloride channel and a member of the superfamily of cysteine loop (Cys-loop) neurotransmitter receptors, which also comprises the nicotinic acetylcholine receptor (nAChR). Within the extracellular domain (ECD), the eponymous Cys-loop harbors two conserved cysteines, assumed to be linked by a superfamily-specific disulfide bond. The GlyR ECD carries three additional cysteine residues, two are predicted to form a second, GlyR-specific bond. The configuration of none of the cysteines of GlyR, however, had been determined directly. Based on a crystal structure of the nAChRalpha1 ECD, we generated a model of the human GlyRalpha1 where close proximity of the respective cysteines was consistent with the formation of both the Cys-loop and the GlyR-specific disulfide bonds. To identify native disulfide bonds, the GlyRalpha1 ECD was heterologously expressed and refolded under oxidative conditions. By matrix-assisted laser desorption ionization time-of-flight mass spectrometry, we detected tryptic fragments of the ECD indicative of disulfide bond formation for both pairs of cysteines, as proposed by modeling. The identity of tryptic fragments was confirmed using chemical modification of cysteine and lysine residues. As evident from circular dichroism spectroscopy, mutagenesis of single cysteines did not impair refolding of the ECD in vitro, whereas it led to partial or complete intracellular retention and consequently to a loss of function of full-length GlyR subunits in human embryonic kidney 293 cells. Our results indicate that the GlyR ECD forms both a Cys-loop and a GlyR-specific disulfide bond. In addition, cysteine residues appear to be important for protein maturation in vivo.

Indexed as

Models, MolecularPeptide MappingProtein FoldingAnimalsCell LineChloride ChannelsDisulfidesHumansMiceProtein Structure, SecondaryProtein Structure, TertiaryReceptors, GlycineSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationChloride ChannelsDisulfidesReceptors, Glycine

Identifiers

PMID19861413
PMCPMC2794728
OpenAlexW2006771481

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.