Evidence map›Paper›PMID 19861202›Full record

ArticleOtolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery2009

2D-DIGE proteomic characterization of head and neck squamous cell carcinoma.

Mark A Merkley, Paul M Weinberger, Lana L Jackson, Robert H Podolsky, Jeffrey R Lee, William S Dynan

Abstract read
In one paragraph

Article in Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Mark A MerkleyInstitute for Molecular Medicine and Genetics, Medical College of Georgia, Augusta, GA 30912, USA.
Paul M Weinberger
Lana L Jackson
Robert H Podolsky
Jeffrey R Lee
William S Dynan
Augusta University · US

Funding

Laser Capture Microscopy and 2D-DIGE: Cancer ProteomicsR33CA095941 · NCI · MEDICAL COLLEGE OF GEORGIA (MCG) · PI DYNAN, WILLIAM S · 2005 to 2007
$1.0M
NCI NIH HHS 5 R33 CA095941-04NCI NIH HHS R33 CA095941
6 · The paper itself

Abstract

objectiveIdentify proteins that are differentially expressed between head and neck squamous cell cancer (HNSCC) and patient-matched normal adjacent tissue, and validate findings in a separate patient cohort. STUDY

designCross-sectional study of surgical specimens.

settingTertiary care academic medical center. SUBJECTS AND

methodsLaser capture microdissection and two-dimensional difference gel electrophoresis were used previously to establish proteomic profiles for tumor and normal adjacent tissue from 14 patients. Here, significance analysis of microarray was used to rank candidate biomarkers. Spots meeting statistical and biological criteria of significance were analyzed by liquid chromatography and tandem mass spectrometry to obtain protein identifications. The expression pattern of the highest-ranked candidate biomarker (cornulin) was validated in a larger, independent patient cohort (n = 68) by immunohistochemical staining of a tissue microarray.

resultsOf 732 spots, 117 (15.9%) met criteria for significance. Identities were obtained for 39 spots, representing 17 different proteins. Four proteins were novel in the context of HNSCC: glutathione synthetase, which was upregulated; and cornulin (squamous epithelial heat shock protein 53), guanylate binding protein 6, and heat shock 70 kDa protein 5 (glucose-regulated protein, 78 kDa), which were downregulated. Cornulin functions in the stress response in normal squamous epithelium, and reduced expression has been proposed as a marker of susceptibility to laryngopharyngeal reflux and other stressors. Loss of cornulin expression was confirmed in an independent HNSCC patient cohort (P < 0.001).

conclusionsDownregulation of cornulin is a prominent feature of the molecular signature of HNSCC identified by comparative proteomics. Cornulin may represent a link between HNSCC and other pathologies arising in stratified squamous epithelium.

Indexed as

AgedBiomarkersCarcinoma, Squamous CellChromatography, LiquidCross-Sectional StudiesDown-RegulationElectrophoresis, Gel, Two-DimensionalFemaleGlutathione SynthaseHead and Neck NeoplasmsHumansImmunohistochemistryMaleMicrodissectionMiddle AgedNeoplasm ProteinsBiomarkersGlutathione SynthaseNeoplasm Proteins

Identifiers

PMID19861202
PMCPMC2847880
OpenAlexW2058317162

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.