Evidence map›Paper›PMID 19859549›Full record

ArticlePloS one2009

Proteomic and phospho-proteomic profile of human platelets in basal, resting state: insights into integrin signaling.

Amir H Qureshi, Vineet Chaoji, Dony Maiguel, Mohd Hafeez Faridi, Constantinos J Barth, Saeed M Salem, Mudita Singhal, Darren Stoub, Bryan Krastins, Mitsunori Ogihara and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 149 citations in OpenAlex.

  1. Pooled it
  2. Trial
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  7. Article
  8. Article
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  11. A New Role of NAP1L1 in Megakaryocytes and Human Platelets.International journal of molecular sciences · 2022
    Article
  12. Article
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  15. Article
  16. Progress of Platelet Derivatives for Cartilage Tissue Engineering.Frontiers in bioengineering and biotechnology · 2022
    Review
  17. Article
  18. Review
  19. Review
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Amir H QureshiNephrology Division, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, United States of America.
Vineet Chaoji
Dony Maiguel
Mohd Hafeez Faridi
Constantinos J Barth
Saeed M Salem
Mudita Singhal
Darren Stoub
Bryan Krastins
Mitsunori Ogihara
Mohammed J Zaki
Vineet Gupta
University of Miami · USRensselaer Polytechnic Institute · USMassachusetts General Hospital · USPacific Northwest National Laboratory · USRollins College · USThermo Fisher Scientific (United States) · US

Funding

Beta2 Integrin Activation and SignalingK01DK068253 · NIDDK · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI GUPTA, VINEET · 2004 to 2010
$709k
HTS Assay for Discovery:Small Molecule Regulators (RMI)R03NS053659 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI GUPTA, VINEET · 2005 to 2005
$88k
NIBIB NIH HHS 1R01EB0080161NIDDK NIH HHS K01 DK068253NIDDK NIH HHS K01DK068253NINDS NIH HHS R03 NS053659NINDS NIH HHS R03NS053659
6 · The paper itself

Abstract

During atherogenesis and vascular inflammation quiescent platelets are activated to increase the surface expression and ligand affinity of the integrin alphaIIbbeta3 via inside-out signaling. Diverse signals such as thrombin, ADP and epinephrine transduce signals through their respective GPCRs to activate protein kinases that ultimately lead to the phosphorylation of the cytoplasmic tail of the integrin alphaIIbbeta3 and augment its function. The signaling pathways that transmit signals from the GPCR to the cytosolic domain of the integrin are not well defined. In an effort to better understand these pathways, we employed a combination of proteomic profiling and computational analyses of isolated human platelets. We analyzed ten independent human samples and identified a total of 1507 unique proteins in platelets. This is the most comprehensive platelet proteome assembled to date and includes 190 membrane-associated and 262 phosphorylated proteins, which were identified via independent proteomic and phospho-proteomic profiling. We used this proteomic dataset to create a platelet protein-protein interaction (PPI) network and applied novel contextual information about the phosphorylation step to introduce limited directionality in the PPI graph. This newly developed contextual PPI network computationally recapitulated an integrin signaling pathway. Most importantly, our approach not only provided insights into the mechanism of integrin alphaIIbbeta3 activation in resting platelets but also provides an improved model for analysis and discovery of PPI dynamics and signaling pathways in the future.

Indexed as

Gene Expression RegulationAmino Acid MotifsBlood PlateletsComputational BiologyFlow CytometryHumansIntegrinsMass SpectrometryPhosphorylationPlatelet AggregationProteomeProteomicsSignal TransductionIntegrinsProteome

Identifiers

PMID19859549
PMCPMC2762604
OpenAlexW2118688587

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.