Evidence map›Paper›PMID 19858285›Full record

ArticleGenetics2010

Evolution at a high imposed mutation rate: adaptation obscures the load in phage T7.

R Springman, T Keller, I J Molineux, J J Bull

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. λ Recombineering Used to Engineer the Genome of Phage T7.Antibiotics (Basel, Switzerland) · 2020
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Lethal mutagenesis failure may augment viral adaptation.Molecular biology and evolution · 2014
    Article
  11. Genome dynamics during experimental evolution.Nature reviews. Genetics · 2013
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Interactions between evolutionary processes at high mutation rates.Evolution; international journal of organic evolution · 2012
    Article
  17. Viral quasispecies evolution.Microbiology and molecular biology reviews : MMBR · 2012
    Review
  18. Article
  19. Multiple genetic pathways to similar fitness limits during viral adaptation to a new host.Evolution; international journal of organic evolution · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

R SpringmanInstitute for Cellular and Molecular Biology, Center for Computational Biology and Bioinformatics, Section of Integrative Biology, Section of Molecular Genetics and Microbiology, University of Texas, Austin, Texas 78712, USA.
T Keller
I J Molineux
J J Bull
The University of Texas at Austin · US

Funding

Experimental viral evolution at high mutation rateR01GM057756 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI BULL, JAMES J · 1998 to 2013
$2.9M
MECHANISMS OF PHAGE EXCLUSION SYSTEMR01GM032095 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI MOLINEUX, IAN J · 1985 to 2008
$2.2M
NIGMS NIH HHS GM 57756NIGMS NIH HHS R01 GM032095NIGMS NIH HHS R01 GM057756
6 · The paper itself

Abstract

Evolution at high mutation rates is expected to reduce population fitness deterministically by the accumulation of deleterious mutations. A high enough rate should even cause extinction (lethal mutagenesis), a principle motivating the clinical use of mutagenic drugs to treat viral infections. The impact of a high mutation rate on long-term viral fitness was tested here. A large population of the DNA bacteriophage T7 was grown with a mutagen, producing a genomic rate of 4 nonlethal mutations per generation, two to three orders of magnitude above the baseline rate. Fitness-viral growth rate in the mutagenic environment-was predicted to decline substantially; after 200 generations, fitness had increased, rejecting the model. A high mutation load was nonetheless evident from (i) many low- to moderate-frequency mutations in the population (averaging 245 per genome) and (ii) an 80% drop in average burst size. Twenty-eight mutations reached high frequency and were thus presumably adaptive, clustered mostly in DNA metabolism genes, chiefly DNA polymerase. Yet blocking DNA polymerase evolution failed to yield a fitness decrease after 100 generations. Although mutagenic drugs have caused viral extinction in vitro under some conditions, this study is the first to match theory and fitness evolution at a high mutation rate. Failure of the theory challenges the quantitative basis of lethal mutagenesis and highlights the potential for adaptive evolution at high mutation rates.

Indexed as

Evolution, MolecularAdaptation, BiologicalBacteriophage T7DNA-Directed DNA PolymeraseGenome, ViralMutagenesisMutagensMutationSequence Analysis, DNADNA-Directed DNA PolymeraseMutagens

Identifiers

PMID19858285
PMCPMC2815918
OpenAlexW2155896989

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.