ArticleNucleic acids research2010
PlnTFDB: updated content and new features of the plant transcription factor database.
Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 391 papers, 2 of them syntheses that pooled it.
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Who cites it
391 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Meta-analysis of drought-tolerant genotypes in Oryza sativa: A network-based approach.PloS one · 2019Pooled it
- Comparative transcriptome meta-analysis of Arabidopsis thaliana under drought and cold stress.PloS one · 2018Pooled it
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- PlantGATA: a comprehensive database for plant GATA transcription factors.Functional & integrative genomics · 2026Article
- Expression profiles of transcription factors and aquaporins suggest putative roles in rubber biosynthesis regulation and drought stress adaptation in guayule.Scientific reports · 2026Article
- Genome-wide identification of Hsf gene family in citrus and functional analysis of CsHsfA1a in heat stress response.Plant cell reports · 2026Article
- First whole genome sequence of a diploid crop wild relative of the Andean tuber "oca": Annotation and comparative genomic analysis of Oxalis oulophora.The plant genome · 2026Article
- Identification and functional validation of hub genes responding to waterlogging stress during the filling period in quinoa (Chenopodium Quinoa Willd.).BMC plant biology · 2026Article
- MegaPlantTF: a machine learning framework for comprehensive identification and classification of plant transcription factors.Bioinformatics (Oxford, England) · 2026Article
- Genome-Wide Identification and Analysis of bZIP Transcription Factors inInternational journal of molecular sciences · 2025Article
- Metabolomic response ofGM crops & food · 2025Article
- Transcriptomic profiling to investigate the therapeutic potential and medicinal properties of Momordica cymbalaria.Scientific reports · 2025Article
- Joint analysis of transcriptome and metabolome on the accumulation mechanism of flavonoids in quinoa seedlings under flooding stress.BMC plant biology · 2025Article
- Transcriptomic insights into the synergistic effects of darkness and mechanical stimulation on peanut pod development.BMC plant biology · 2025Article
- Comprehensive Genome-Wide Investigation and Transcriptional Regulation of the bZIP Gene Family in Litchi Fruit Development.Plants (Basel, Switzerland) · 2025Article
- Combining Physiology and Transcriptome to Reveal Mechanisms ofPlants (Basel, Switzerland) · 2025Article
- Physiological mechanism of lodging resistance of oat stalk and analysis of transcriptome differences.Frontiers in plant science · 2025Article
- Mechanisms of flavonoids in quinoa's response to flooding stress in grain filling stage.Frontiers in plant science · 2025Article
- Metabolomic and transcriptomic insights into the mechanism of sugar and acid accumulation in the pulp of sour- and sweet-tastingFrontiers in plant science · 2025Article
331 more citing papers are in PubMed but not listed here.
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Plant Transcription Factor Database (PlnTFDB; http://plntfdb.bio.uni-potsdam.de/v3.0/) is an integrative database that provides putatively complete sets of transcription factors (TFs) and other transcriptional regulators (TRs) in plant species (sensu lato) whose genomes have been completely sequenced and annotated. The complete sets of 84 families of TFs and TRs from 19 species ranging from unicellular red and green algae to angiosperms are included in PlnTFDB, representing >1.6 billion years of evolution of gene regulatory networks. For each gene family, a basic description is provided that is complemented by literature references, and multiple sequence alignments of protein domains. TF or TR gene entries include information of expressed sequence tags, 3D protein structures of homologous proteins, domain architecture and cross-links to other computational resources online. Moreover, the different species in PlnTFDB are linked to each other by means of orthologous genes facilitating cross-species comparisons.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.