Evidence map›Paper›PMID 19857594›Full record

ReviewFungal genetics and biology : FG & B2010

Fungal PDR transporters: Phylogeny, topology, motifs and function.

Erwin Lamping, Philippe V Baret, Ann R Holmes, Brian C Monk, Andre Goffeau, Richard D Cannon

Open access · greenAbstract readReview
In one paragraph

Review in Fungal genetics and biology : FG & B, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 160 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Multidrug efflux pumps and innate azole resistance of Mucor lusitanicus.The Journal of antimicrobial chemotherapy · 2025
    Article
  9. Review
  10. Article
  11. Article
  12. Lack of an atypical PDR transporter generates an immunogenicbioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. An in vitro set-up to study Pdr5-mediated substrate translocation.Protein science : a publication of the Protein Society · 2024
    Article
  18. Article
  19. Article
  20. OMICS and Other Advanced Technologies in Mycological Applications.Journal of fungi (Basel, Switzerland) · 2023
    Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Erwin LampingDepartment of Oral Sciences, University of Otago, Dunedin, New Zealand.
Philippe V Baret
Ann R Holmes
Brian C Monk
Andre Goffeau
Richard D Cannon
University of Otago · NZUCLouvain · BE

Funding

Fungal transporters: from resistance to new antifungalsR01DE016885 · NIDCR · UNIVERSITY OF OTAGO · PI CANNON, RICHARD D · 2005 to 2008
$927k
NIDCR NIH HHS R01 DE016885NIDCR NIH HHS R01DE016885-01
6 · The paper itself

Abstract

The overexpression of pleiotropic drug resistance (PDR) efflux pumps of the ATP-binding cassette (ABC) transporter superfamily frequently correlates with multidrug resistance. Phylogenetic analysis of 349 full-size ( approximately 160kDa) PDR proteins (Pdrps) from 55 fungal species, including major fungal pathogens, identified nine separate protein clusters (A-G, H1a/H1b and H2). Fungal, plant and human ABCG-family Pdrps possess a nucleotide-binding domain [NBD] and a transmembrane domain [TMD] in a family-defining 'reverse' ABC transporter topology [NBD-TMD] that is duplicated [NBD-TMD](2) in full-size fungal and plant Pdrps. Although full-size Pdrps have similar halves indicating early gene duplication/fusion, they show asymmetry of their NBDs and extracellular loops (ELs). Members of cluster F are most symmetric and may be closely related to the evolutionary ancestor of Pdrps. Unique structural elements are predicted, new PDR-specific motifs identified, and the significance of these and other structural features discussed.

Indexed as

PhylogenyAmino Acid MotifsAntifungal AgentsATP-Binding Cassette TransportersDNA-Binding ProteinsDrug Resistance, FungalDrug Resistance, MultipleFungal ProteinsFungiHumansAntifungal AgentsATP-Binding Cassette TransportersDNA-Binding ProteinsFungal Proteins

Identifiers

PMID19857594
PMCPMC2814995
OpenAlexW2001848963

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.