Evidence map›Paper›PMID 19854948›Full record

ArticleNucleic acids research2010

The neurofibromatosis type I pre-mRNA is a novel target of CELF protein-mediated splicing regulation.

Victoria A Barron, Hui Zhu, Melissa N Hinman, Andrea N Ladd, Hua Lou

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. T-Cell Intracellular Antigen 1-Like Protein in Physiology and Pathology.International journal of molecular sciences · 2022
    Review
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Victoria A BarronDepartment of Genetics, School of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.
Hui Zhu
Melissa N Hinman
Andrea N Ladd
Hua Lou
Cleveland Clinic Lerner College of Medicine · USCase Comprehensive Cancer Center

Funding

TRAINING IN NORMAL AND ABNORMAL DEVELOPMENTT32HD007104 · NICHD · CASE WESTERN RESERVE UNIVERSITY · PI HARTE, PETER J. · 1985 to 2010
$3.5M
TRAINING IN GENETICST32GM008613 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI SALZ, HELEN KAREN · 1996 to 2010
$3.1M
Hu proteins as novel splicing regulators in neuronsR01NS049103 · NINDS · CASE WESTERN RESERVE UNIVERSITY · PI LOU, HUA · 2004 to 2013
$2.3M
Hu proteins as novel splicing regulators in neuronsR56NS049103 · NINDS · CASE WESTERN RESERVE UNIVERSITY · PI LOU, HUA · 2009 to 2009
$353k
NICHD NIH HHS T32 HD007104NICHD NIH HHS T32 HD-007104-32NIGMS NIH HHS T32 GM008613NIGMS NIH HHS T32GM008613NINDS NIH HHS NS-049103NINDS NIH HHS R01 NS049103NINDS NIH HHS R56 NS049103
6 · The paper itself

Abstract

The CUG-BP and ETR-3 like factors (CELF) are a family of six highly conserved RNA-binding proteins that preferentially bind to UG-rich sequences. One of the key functions of these proteins is to mediate alternative splicing in a number of tissues, including brain, heart and muscle. To fully understand the function of CELF proteins, it is important to identify downstream targets of CELF proteins. In this communication, we report that neurofibromatosis type I (NF1) exon 23a is a novel target of CELF protein-mediated splicing regulation in neuron-like cells. NF1 regulates Ras signaling, and the isoform that excludes exon 23a shows 10 times greater ability to down-regulate Ras signaling than the isoform that includes exon 23a. Five of the six CELF proteins strongly suppress the inclusion of NF1 exon 23a. Over-expression or siRNA knockdown of these proteins in cell transfection experiments altered the levels of NF1 exon 23a inclusion. In vitro binding and splicing analyses demonstrate that CELF proteins block splicing through interfering with binding of U2AF(65). These studies, combined with our previous investigations demonstrating a role for Hu proteins and TIA-1/TIAR in controlling NF1 exon 23a inclusion, highlight the complex nature of regulation of this important alternative splicing event.

Indexed as

Alternative SplicingAnimalsBase SequenceCCAAT-Enhancer-Binding Protein-deltaCell Line, TumorExonsHeLa CellsHumansMolecular Sequence DataNeurofibromin 1Nuclear ProteinsRatsRibonucleoproteinsRNA, MessengerRNA PrecursorsSplicing Factor U2AFCCAAT-Enhancer-Binding Protein-deltaCEBPD protein, humanCebpd protein, ratNeurofibromin 1Nuclear ProteinsRibonucleoproteinsRNA, MessengerRNA PrecursorsSplicing Factor U2AFU2AF2 protein, human

Identifiers

PMID19854948
PMCPMC2800208
OpenAlexW2161716735

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.