Evidence map›Paper›PMID 19854902›Full record

ArticleJournal of bacteriology2010

Transcriptional and functional analysis of the Neisseria gonorrhoeae Fur regulon.

Lydgia A Jackson, Thomas F Ducey, Michael W Day, Jeremy B Zaitshik, Joshua Orvis, David W Dyer

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 61 citations in OpenAlex.

  1. Trial
  2. Genomic analysis ofMicrobiology spectrum · 2026
    Article
  3. Restriction-modification systems are required forProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Norepinephrine derepresses the Fur regulon ofJournal of bacteriology · 2026
    Article
  5. Article
  6. Article
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  8. Article
  9. Review
  10. Stealthy microbes: HowFrontiers in cellular and infection microbiology · 2022
    Review
  11. Article
  12. Article
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  14. Review
  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Lydgia A JacksonDepartment of Microbiology and Immunology, University of Oklahoma Health Sciences Center, 975 NE 10th Street, Oklahoma City, OK 73104, USA. lydgia-jackson@ouhsc.edu
Thomas F Ducey
Michael W Day
Jeremy B Zaitshik
Joshua Orvis
David W Dyer
University of Oklahoma Health Sciences Center · USAgricultural Research Service · USUniversity of Maryland, Baltimore · US

Funding

USE OF 16S RIBOSOMAL DNA SEQUENCING TO EVALUATE NGUP20RR015564 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI GILLASPY, ALLISON · 2000 to 2009
$18.5M
NCRR NIH HHS 2 P20 RR-015564NCRR NIH HHS P20 RR015564
6 · The paper itself

Abstract

To ensure survival in the host, bacteria have evolved strategies to acquire the essential element iron. In Neisseria gonorrhoeae, the ferric uptake regulator Fur regulates metabolism through transcriptional control of iron-responsive genes by binding conserved Fur box (FB) sequences in promoters during iron-replete growth. Our previous studies showed that Fur also controls the transcription of secondary regulators that may, in turn, control pathways important to pathogenesis, indicating an indirect role for Fur in controlling these downstream genes. To better define the iron-regulated cascade of transcriptional control, we combined three global strategies--temporal transcriptome analysis, genomewide in silico FB prediction, and Fur titration assays (FURTA)--to detect genomic regions able to bind Fur in vivo. The majority of the 300 iron-repressed genes were predicted to be of unknown function, followed by genes involved in iron metabolism, cell communication, and intermediary metabolism. The 107 iron-induced genes encoded hypothetical proteins or energy metabolism functions. We found 28 predicted FBs in FURTA-positive clones in the promoters and within the open reading frames of iron-repressed genes. We found lower levels of conservation at critical thymidine residues involved in Fur binding in the FB sequence logos of FURTA-positive clones with intragenic FBs than in the sequence logos generated from FURTA-positive promoter regions. In electrophoretic mobility shift assay studies, intragenic FBs bound Fur with a lower affinity than intergenic FBs. Our findings further indicate that transcription under iron stress is indirectly controlled by Fur through 12 potential secondary regulators.

Indexed as

Bacterial ProteinsComputational BiologyElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialIronNeisseria gonorrhoeaeOligonucleotide Array Sequence AnalysisRegulonRepressor ProteinsReverse Transcriptase Polymerase Chain ReactionBacterial Proteinsferric uptake regulating proteins, bacterialIronRepressor Proteins

Identifiers

PMID19854902
PMCPMC2798271
OpenAlexW2058686496

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.