Evidence map›Paper›PMID 19854717›Full record

SynthesisAnnals of the rheumatic diseases2010

The chromosome 16q region associated with ankylosing spondylitis includes the candidate gene tumour necrosis factor receptor type 1-associated death domain (TRADD).

Jennifer J Pointon, David Harvey, Tugce Karaderi, Louise H Appleton, Claire Farrar, Millicent A Stone, Roger D Sturrock, John D Reveille, Michael H Weisman, Michael M Ward and 2 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Annals of the rheumatic diseases, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Spondyloarthritides: Theories and beyond.Frontiers in pediatrics · 2022
    Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Genetics of spondyloarthritis--beyond the MHC.Nature reviews. Rheumatology · 2012
    Review
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 3 countries.

Jennifer J PointonUniversity of Oxford Institute for Musculoskeletal Sciences, Botnar Research Centre, Oxford OX3 7LD, UK. jenny.pointon@ndorms.ox.ac.uk
David Harvey
Tugce Karaderi
Louise H Appleton
Claire Farrar
Millicent A Stone
Roger D Sturrock
John D Reveille
Michael H Weisman
Michael M Ward
Matthew A Brown
B Paul Wordsworth
NIHR Oxford Musculoskeletal Biomedical Research Centre · GBCedars-Sinai Medical Center · USOffice of Extramural Research · USRoyal National Hospital for Rheumatic Diseases · GBThe University of Texas Health Science Center at Houston · USUniversity of Glasgow · GBUniversity of Oxford · GBUniversity of Queensland · AU

Funding

Clinical Support Services for the NIAMS Intramural Research ProgramZIDAR041180 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI COLBERT, ROBERT · 2009 to 2025
$119.2M
Outcomes in Rheumatic DiseasesZIAAR041153 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI WARD, MICHAEL · 2009 to 2020
$12.6M
Arthritis Research UKIntramural NIH HHS ZIA AR041153Medical Research Council G0000934Wellcome Trust
6 · The paper itself

Abstract

objectiveTo replicate and refine the reported association of ankylosing spondylitis (AS) with two non-synonymous single nucleotide polymorphisms (nsSNPs) on chromosome 16q22.1.

methodsFirstly, 730 independent UK patients with AS were genotyped for rs9939768 and rs6979 and allele frequencies were compared with 2879 previously typed historic disease controls. Secondly, the two data sets were combined in meta-analyses. Finally, 5 tagging SNPs, located between rs9939768 and rs6979, were analysed in 1604 cases and 1020 controls.

resultsThe association of rs6979 with AS was replicated, p=0.03, OR=1.14 (95% CI 1.01 to 1.28), and a trend for association with rs9939768 detected, p=0.06, OR=1.25 (95% CI 0.99 to 1.57). Meta-analyses revealed association of both SNPs with AS, p=0.0008, OR=1.31 (95% CI 1.12 to 1.54) and p=0.0009, OR=1.15 (95% CI 1.06 to 1.23) for rs9939768 and rs6979, respectively. New associations with rs9033 and rs868213 (p=0.00002, OR=1.23 (95% CI 1.12 to 1.36) and p=0.00002 OR=1.45 (95% CI 1.22 to 1.72), respectively, were identified.

conclusionsThe region on chromosome 16 that has been replicated in the present work is interesting as the highly plausible candidate gene, tumour necrosis factor receptor type 1 (TNFR1)-associated death domain (TRADD), is located between rs9033 and rs868213. It will require additional work to identify the primary genetic association(s) with AS.

Indexed as

Case-Control StudiesChromosomes, Human, Pair 16Gene FrequencyGenetic Predisposition to DiseaseHumansPolymorphism, Single NucleotideSpondylitis, AnkylosingTNF Receptor-Associated Death Domain ProteinTNF Receptor-Associated Death Domain Protein

Identifiers

PMID19854717
PMCPMC2959172
OpenAlexW2156374735

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.