Evidence map›Paper›PMID 19854689›Full record

ArticleStem cell research2010

Pluripotency genes overexpressed in primate embryonic stem cells are localized on homologues of human chromosomes 16, 17, 19, and X.

Ahmi Ben-Yehudah, Christopher S Navara, Carrie J Redinger, Jocelyn D Mich-Basso, Carlos A Castro, Stacie Oliver, Lara J Chensny, Thomas J Richards, Naftali Kaminski, Gerald Schatten

Abstract read
In one paragraph

Article in Stem cell research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Ahmi Ben-YehudahPittsburgh Development Center, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
Christopher S Navara
Carrie J Redinger
Jocelyn D Mich-Basso
Carlos A Castro
Stacie Oliver
Lara J Chensny
Thomas J Richards
Naftali Kaminski
Gerald Schatten
University of Pittsburgh · US

Funding

PRIMATE RESOURCESP01HD047675 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI SCHATTEN, GERALD · 2005 to 2010
$15.5M
RHESUS PROPAGATION BY INTRACYTOPLASMIC NUCLEAR INJECTIONR24RR013632 · NCRR · OREGON REGIONAL PRIMATE RESEARCH CENTER · PI SCHATTEN, GERALD · 1998 to 2007
$10.2M
EGG-MEDIATED MOTILITY DURING FERTILIZATIONR37HD012913 · NICHD · OREGON REGIONAL PRIMATE RESEARCH CENTER · PI SCHATTEN, GERALD · 1997 to 2006
$4.2M
NCRR NIH HHS R24 RR013632NICHD NIH HHS P01 HD047675NICHD NIH HHS P01 HD 47675NICHD NIH HHS R37 HD012913
6 · The paper itself

Abstract

While human embryonic stem cells (hESCs) are predisposed toward chromosomal aneploidities on 12, 17, 20, and X, rendering them susceptible to transformation, the specific genes expressed are not yet known. Here, by identifying the genes overexpressed in pluripotent rhesus ESCs (nhpESCs) and comparing them both to their genetically identical differentiated progeny (teratoma fibroblasts) and to genetically related differentiated parental cells (parental skin fibroblasts from whom gametes were used for ESC derivation), we find that some of those overexpressed genes in nhpESCs cluster preferentially on rhesus chromosomes 16, 19, 20, and X, homologues of human chromosomes 17, 19, 16, and X, respectively. Differentiated parental skin fibroblasts display gene expression profiles closer to nhpESC profiles than to teratoma cells, which are genetically identical to the pluripotent nhpESCs. Twenty over- and underexpressed pluripotency modulators, some implicated in neurogenesis, have been identified. The overexpression of some of these genes discovered using pedigreed nhpESCs derived from prime embryos generated by fertile primates, which is impossible to perform with the anonymously donated clinically discarded embryos from which hESCs are derived, independently confirms the importance of chromosome 17 and X regions in pluripotency and suggests specific candidates for targeting differentiation and transformation decisions.

Indexed as

Chromosomes, HumanGene ExpressionAnimalsCell DifferentiationCell LineChromosomes, Human, Pair 16Chromosomes, Human, Pair 17Chromosomes, Human, Pair 19Chromosomes, Human, XEmbryonic Stem CellsFemaleFibroblastsHumansMacaca mulattaMalePluripotent Stem Cells

Identifiers

PMID19854689
PMCPMC2818202
OpenAlexW1973448449

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.