ArticlePlant molecular biology2010
Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice.
Article in Plant molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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28 citing papers in PubMed, 68 citations in OpenAlex.
- Low temperature-induced profiling of transcription and alternative splicing during seed germination in rice.BMC genomics · 2026Article
- Integrated Multi-Omics Analysis Reveals the Survival Strategy of Dongxiang Wild Rice (DXWR,Plants (Basel, Switzerland) · 2025Article
- Disruption of the OsWRKY71 transcription factor gene results in early rice seed germination under normal and cold stress conditions.BMC plant biology · 2024Article
- Identification of Candidate Genes for Cold Tolerance at Seedling Stage by GWAS in Rice (Biology · 2024Article
- Analysis of genome-wide association studies of low-temperature germination in Xian and Geng rice.Frontiers in plant science · 2024Article
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- Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology.BMC plant biology · 2023Article
- The grain yield regulatorFrontiers in genetics · 2022Article
- Article
- Review
- Integrative QTL Identification, Fine Mapping and Candidate Gene Analysis of a Major Locus qLTG3a for Seed Low-Temperature Germinability in Rice.Rice (New York, N.Y.) · 2021Article
- Identification of Candidate Genes Conferring Cold Tolerance to Rice (Frontiers in plant science · 2021Article
- Diverse Roles of MAX1 Homologues in Rice.Genes · 2020Article
- Identification of main-effect quantitative trait loci (QTLs) for low-temperature stress tolerance germination- and early seedling vigor-related traits in rice (Molecular breeding : new strategies in plant improvement · 2020Article
- Article
- The bZIP73 transcription factor controls rice cold tolerance at the reproductive stage.Plant biotechnology journal · 2019Article
- Influence of isopropylmalate synthase OsIPMS1 on seed vigour associated with amino acid and energy metabolism in rice.Plant biotechnology journal · 2019Article
- Overexpression of ABA ReceptorFrontiers in plant science · 2019Article
- Genome-Wide Association Mapping for Cold Tolerance in a Core Collection of Rice (Frontiers in plant science · 2018Article
- Breeding approaches and genomics technologies to increase crop yield under low-temperature stress.Plant cell reports · 2017Review
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Authors and funding
2 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The control of seed germination under environmental conditions, where plants will be grown, is important for the adaptability of plants. Low-temperature is one of the most common environmental stress factors that affect plant growth and development and places a major limit on crop productivity in cultivated areas. Previously, qLTG3-1, a major quantitative trait locus controlling low-temperature tolerance at the germination stage in rice (called low-temperature germinability) was identified, which encodes a protein of unknown function. To identify genes targeted by qLTG3-1, a genome-wide expression profiling analysis using the 44 K Rice Oligo microarray was performed. Because the expression of qLTG3-1 was dramatically increased at 1 day after incubation, the expression profiles at this time were compared between Hayamasari, which has a loss-of-function qLTG3-1 allele, and a near isogenic line with a functional allele. A total of 4,587 genes showed significant differences between their expression levels in the two lines. Most of these genes might be involved in the process of seed germination itself, and then a focus was made on qLTG3-1 dependently induced or suppressed genes, defined as 'qLTG3-1 dependent' genes. Twenty-nine 'qLTG3-1 dependent' genes with diverse functions were categorized, implying that disruption of cellular homeostasis leads to a wide range of metabolic alterations and diverse cross-talk between various signaling pathways. In particular, genes involved in defense responses were up-regulated by qLTG3-1, indicating that qLTG3-1 expression is required for the expression of defense response genes in low-temperature germinability in rice.
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