Evidence map›Paper›PMID 19851774›Full record

ArticlePlant cell reports2009

Monitoring gene expression of potato under salinity using cDNA microarrays.

Sylvain Legay, Didier Lamoureux, Jean-François Hausman, Lucien Hoffmann, Danièle Evers

Abstract read
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Salinity Tolerance of Two Potato Cultivars (Frontiers in plant science · 2018
    Article
  6. Article
  7. Differential gene expression of salt-stressedJournal, genetic engineering & biotechnology · 2016
    Article
  8. Transcriptome differences between fiber-type and seed-typePhysiology and molecular biology of plants : an international journal of functional plant biology · 2016
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sylvain LegayDepartment EVA Environment and Agrobiotechnologies, Centre de Recherche Public-Gabriel Lippmann, 4422 Belvaux, Luxembourg.
Didier Lamoureux
Jean-François Hausman
Lucien Hoffmann
Danièle Evers
Consumers, Health, Agriculture and Food Executive Agency · LU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular response to salt exposure was studied in the leaves of a Solanum tuberosum clone using cDNA microarray. Differentially expressed genes were classified according to their known or predicted function and their expression ratio as compared to the control. The major changes upon a 150 mM NaCl exposure in potato leaves occurred in the photosystem apparatus and Calvin cycle: many transcripts coding for proteins belonging to photosystems I and II and chlorophyll synthesis were repressed. On the other hand, we observed the induction of various kinds of transcription factors implicated in osmotic stress response via ABA-dependent or ABA-independent pathways but also in plant defense pathways. This revealed a crosstalk between abiotic and biotic stress responses during salt exposure, which activated several adaptation mechanisms including heat shock proteins, late embryogenesis abundant, dehydrins and PR proteins. Gene expression changes related to carbohydrate and amino acid metabolism were also observed, pointing at putative modifications at the metabolic level.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantOligonucleotide Array Sequence AnalysisSalinityBiological TransportCarbohydratesCaseinsDown-RegulationExtracellular SpaceGenes, PlantIntracellular SpaceLipidsPlant Proteins, DietarySodium ChlorideSoilSolanum tuberosumCarbohydratesCaseinsLipidsOsmolitePlant Proteins, DietarySodium ChlorideSoil

Identifiers

PMID19851774
OpenAlexW2091477944

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.