Evidence map›Paper›PMID 19851738›Full record

ArticleJournal of microbiology (Seoul, Korea)2009

Prediction of bacterial proteins carrying a nuclear localization signal and nuclear targeting of HsdM from Klebsiella pneumoniae.

Je Chul Lee, Dong Sun Kim, Dong Chan Moon, Jung-Hwa Lee, Mi Jin Kim, Su Man Lee, Yong Seok Lee, Se-Won Kang, Eun Jung Lee, Sang Sun Kang and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Risk factors for invasiveFrontiers in cellular and infection microbiology · 2026
    Pooled it
  2. Review
  3. Identification of candidate nucleomodulins in ESKAPE bacteria -Frontiers in cellular and infection microbiology · 2026
    Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Origin of biomolecular games: deception and molecular evolution.Journal of the Royal Society, Interface · 2018
    Article
  9. Article
  10. Article
  11. Functional eukaryotic nuclear localization signals are widespread in terminal proteins of bacteriophages.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Je Chul LeeDepartment of Microbiology, Kyungpook National University School of Medicine, Daegu, Republic of Korea.
Dong Sun Kim
Dong Chan Moon
Jung-Hwa Lee
Mi Jin Kim
Su Man Lee
Yong Seok Lee
Se-Won Kang
Eun Jung Lee
Sang Sun Kang
Eunpyo Lee
Sung Hee Hyun
Kyungpook National University · KREulji University · KRInje University · KRChungbuk National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nuclear targeting of bacterial proteins is an emerging pathogenic mechanism whereby bacterial proteins can interact with nuclear molecules and alter the physiology of host cells. The fully sequenced bacterial genome can predict proteins that target the nuclei of host cells based on the presence of nuclear localization signal (NLS). In the present study, we predicted bacterial proteins with the NLS sequences from Klebsiella pneumoniae by bioinformatic analysis, and 13 proteins were identified as carrying putative NLS sequences. Among them, HsdM, a subunit of KpnAl that is a type I restriction-modification system found in K. pneumoniae, was selected for the experimental proof of nuclear targeting in host cells. HsdM carried the NLS sequences, (7)KKAKAKK(13), in the N-terminus. A transient expression of HsdM-EGFP in COS-1 cells exhibited exclusively a nuclear localization of the fusion proteins, whereas the fusion proteins of HsdM with substitutions in residues lysine to alanine in the NLS sequences, (7)AAAKAAA(13), were localized in the cytoplasm. HsdM was co-localized with importin o in the nuclei of host cells. Recombinant HsdM alone methylated the eukaryotic DNA in vitro assay. Although HsdM tested in this study has not been considered to be a virulence factor, the prediction of NLS motifs from the full sequenced genome of bacteria extends our knowledge of functional genomics to understand subcellular targeting of bacterial proteins.

Indexed as

Nuclear Localization SignalsBacterial ProteinsCell NucleusComputational BiologyDNA Restriction-Modification EnzymesGenes, BacterialGenes, ReporterGenome, BacterialGreen Fluorescent ProteinsHumansKaryopherinsKlebsiella pneumoniaeRecombinant Fusion ProteinsBacterial ProteinsDNA Restriction-Modification EnzymesGreen Fluorescent ProteinsHsdM protein, BacteriaKaryopherinsNuclear Localization SignalsRecombinant Fusion Proteins

Identifiers

PMID19851738
OpenAlexW2149968883

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.