Evidence map›Paper›PMID 19850934›Full record

ArticleThe Journal of biological chemistry2009

Epigenetic gene silencing by the SRY protein is mediated by a KRAB-O protein that recruits the KAP1 co-repressor machinery.

Hongzhuang Peng, Alexey V Ivanov, Hyun J Oh, Yun-Fai C Lau, Frank J Rauscher

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 73 citations in OpenAlex.

  1. SOX on tumors, a comfort or a constraint?Cell death discovery · 2024
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Genetics research · 2021
    Review
  10. Article
  11. Article
  12. MIPPIE: the mouse integrated protein-protein interaction reference.Database : the journal of biological databases and curation · 2020
    Article
  13. Article
  14. Review
  15. Article
  16. Characterization of Coding/Noncoding Variants forJournal of the American Society of Nephrology : JASN · 2018
    Article
  17. Familial and SomaticCancer research · 2018
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Hongzhuang PengWistar Institute, Philadelphia, Pennsylvania 19104, USA.
Alexey V Ivanov
Hyun J Oh
Yun-Fai C Lau
Frank J Rauscher
The Wistar Institute · USSan Francisco VA Medical Center · USUniversity of California, San Francisco · USWest Virginia University · US

Funding

THE ROLE OF HEF1 PROTEIN IN INVASION OF METASTATIC BREAST CANCERP20RR016440 · NCRR · WEST VIRGINIA UNIVERSITY · PI CUFF, CHRISTOPHER F · 2001 to 2010
$22.8M
Role of the BRCA1 Associated Protein BAP1 in DNA RepairR01CA092088 · NCI · WISTAR INSTITUTE · PI RAUSCHER, FRANK J. · 2001 to 2005
$1.8M
Functions of the SNAG Repression Domain in OncogenesisR01CA095561 · NCI · WISTAR INSTITUTE · PI RAUSCHER, FRANK J. · 2003 to 2007
$1.5M
FUNCTIONS OF SRY AND SRY INTERACTIVE PROTEIN GENESR01HD038117 · NICHD · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI LAU, YUN-FAI CHRIS · 2000 to 2004
$1.3M
NCI NIH HHS CA 092088NCI NIH HHS CA 095561NCI NIH HHS R01 CA092088NCI NIH HHS R01 CA095561NICHD NIH HHS HD38117NICHD NIH HHS R01 HD038117
6 · The paper itself

Abstract

The sex determination transcription factor SRY is a cell fate-determining transcription factor that mediates testis differentiation during embryogenesis. It may function by repressing the ovarian determinant gene, RSPO1, action in the ovarian developmental pathway and activates genes, such as SOX9, important for testis differentiation at the onset of gonadogenesis. Further, altered expression of SRY and related SOX genes contribute to oncogenesis in many human cancers. Little is known of the mechanisms by which SRY regulates its target genes. Recently a KRAB domain protein (KRAB-O) that lacks a zinc finger motif has been demonstrated to interact with SRY and hypothesized to function as an adaptor molecule for SRY by tethering the KAP1-NuRD-SETDB1-HP1 silencing machinery to repress SRY targets. We have critically examined this hypothesis by reconstituting and characterizing SRY-KRAB-O-KAP1 interactions. These recombinant molecules can form a ternary complex by direct and high affinity interactions. The KRAB-O protein can simultaneously bind KAP1 and SRY in a noncompetitive but also noncooperative manner. An extensive mutagenesis analysis suggests that different surfaces on KRAB-O are utilized for these independent interactions. Transcriptional repression by SRY requires binding to KRAB-O, thus bridging to the KAP1 repression machinery. This repression machinery is recruited to SRY target promoters in chromatin templates via SRY. These results suggest that SRY has co-opted the KRAB-O protein to recruit the KAP1 repression machinery to sex determination target genes. Other KRAB domain proteins, which lack a zinc finger DNA-binding motif, may function in similar roles as adaptor proteins for epigenetic gene silencing.

Indexed as

Gene SilencingAnimalsCarrier ProteinsCell LineChromatinFemaleHistone-Lysine N-MethyltransferaseHumansMaleMi-2 Nucleosome Remodeling and Deacetylase ComplexMiceNuclear ProteinsPromoter Regions, GeneticProtein MethyltransferasesRepressor ProteinsR-SpondinsCarrier ProteinsChromatinHistone-Lysine N-MethyltransferaseKRAB-O protein, mouseMi-2 Nucleosome Remodeling and Deacetylase ComplexNuclear ProteinsProtein MethyltransferasesRepressor ProteinsRSPO1 protein, humanRSPO1 protein, mouseR-SpondinsSETDB1 protein, humanSETDB1 protein, mouseSex-Determining Region Y ProteinSOX9 protein, humanSox9 protein, mouseSOX9 Transcription FactorSRY protein, humanSry protein, mouseThrombospondinsTRIM28 protein, humanTrim28 protein, mouseTripartite Motif-Containing Protein 28

Identifiers

PMID19850934
PMCPMC2790998
OpenAlexW2083552104

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.