Evidence map›Paper›PMID 19849787›Full record

ArticleMolecular plant pathology2009

Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida.

John T Jones, Amar Kumar, Liliya A Pylypenko, Amarnath Thirugnanasambandam, Lydia Castelli, Sean Chapman, Peter J A Cock, Eric Grenier, Catherine J Lilley, Mark S Phillips and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular plant pathology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Characterization of FiveInternational journal of molecular sciences · 2022
    Article
  6. Profiling the Proteome of Cyst Nematode-Induced Syncytia on Tomato Roots.International journal of molecular sciences · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. TheFrontiers in plant science · 2018
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

John T JonesPlant Pathology Programme, SCRI, Invergowrie, Dundee DD2 5DA, UK. john.jones@scri.ac.uk
Amar Kumar
Liliya A Pylypenko
Amarnath Thirugnanasambandam
Lydia Castelli
Sean Chapman
Peter J A Cock
Eric Grenier
Catherine J Lilley
Mark S Phillips
Vivian C Blok
Institut Agro Rennes-Angers · FRJames Hutton Institute · GBUniversity of Delhi · INUniversity of Leeds · GBUniversity of Manchester · GB

Funding

Biotechnology and Biological Sciences Research Council SAP20474
6 · The paper itself

Abstract

In this article, we describe the analysis of over 9000 expressed sequence tags (ESTs) from cDNA libraries obtained from various life cycle stages of Globodera pallida. We have identified over 50 G. pallida effectors from this dataset using bioinformatics analysis, by screening clones in order to identify secreted proteins up-regulated after the onset of parasitism and using in situ hybridization to confirm the expression in pharyngeal gland cells. A substantial gene family encoding G. pallida SPRYSEC proteins has been identified. The expression of these genes is restricted to the dorsal pharyngeal gland cell. Different members of the SPRYSEC family of proteins from G. pallida show different subcellular localization patterns in plants, with some localized to the cytoplasm and others to the nucleus and nucleolus. Differences in subcellular localization may reflect diverse functional roles for each individual protein or, more likely, variety in the compartmentalization of plant proteins targeted by the nematode. Our data are therefore consistent with the suggestion that the SPRYSEC proteins suppress host defences, as suggested previously, and that they achieve this through interaction with a range of host targets.

Indexed as

Expressed Sequence TagsAnimalsComputational BiologyHelminth ProteinsIn Situ HybridizationMolecular Sequence DataSolanum tuberosumTylenchoideaHelminth Proteins

Identifiers

PMID19849787
PMCPMC6640342
OpenAlexW2045446243

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.