Evidence map›Paper›PMID 19846760›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Mapping of multiple susceptibility variants within the MHC region for 7 immune-mediated diseases.

International MHC and Autoimmunity Genetics Network, John D Rioux, Philippe Goyette, Timothy J Vyse, Lennart Hammarström, Michelle M A Fernando, Todd Green, Philip L De Jager, Sylvain Foisy, Joanne Wang and 19 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 140 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed, 3 pooled it
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 3 syntheses or guidelines pooled it, 257 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
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  6. Trial
  7. Review
  8. Article
  9. Article
  10. Article
  11. Genomic and Serological Rheumatoid Arthritis Biomarkers,Annals of the American Thoracic Society · 2025
    Article
  12. Review
  13. Article
  14. Article
  15. Haplotype Analysis Reveals Pleiotropic Disease Associations in the HLA Region.medRxiv : the preprint server for health sciences · 2024
    Article
  16. MHCtools 1.5: Analysis of MHC Sequencing Data in R.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  17. Article
  18. Review
  19. Article
  20. Review

80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 12 institutions in 5 countries.

International MHC and Autoimmunity Genetics NetworkResearch Center, Université de Montréal and Montreal Heart Institute, Montreal, QC, Canada.
John D Rioux
Philippe Goyette
Timothy J Vyse
Lennart Hammarström
Michelle M A Fernando
Todd Green
Philip L De Jager
Sylvain Foisy
Joanne Wang
Paul I W de Bakker
Stephen Leslie
Gilean McVean
Leonid Padyukov
Lars Alfredsson
Vito Annese
David A Hafler
Qiang Pan-Hammarström
Ritva Matell
Stephen J Sawcer
Alastair D Compston
Bruce A C Cree
Daniel B Mirel
Mark J Daly
Tim W Behrens
Lars Klareskog
Peter K Gregersen
Jorge R Oksenberg
Stephen L Hauser
Broad Institute · USUniversity of California, San Francisco · USKarolinska Institutet · SEKarolinska University Hospital · SEMontreal Heart Institute · CABrigham and Women's Hospital · USFeinstein Institute for Medical Research · USUniversity of Cambridge · GBHammersmith Hospital · GBMassachusetts General Hospital · USUniversity of Oxford · GBYale University · US

Funding

AN NCRR CENTER FOR HIGH THROUGHPUT SNP GENOTYPING AND ANALYSIS: GAIN NETWORKU54RR020278 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2004 to 2008
$14.4M
Systemic Lupus Erythematosus and Ulcerative Colitis StudyU19AI067152 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KLARESKOG, LARS · 2005 to 2009
$10.1M
Universite de Montreal IBD Genetics Research CenterU01DK062432 · NIDDK · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI John D. Rioux · 2002 to 2026
$9.6M
Identification of the IBD genes on chromosomes 3p and 6pR01DK064869 · NIDDK · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI RIOUX, JOHN D. · 2003 to 2016
$7.8M
Arthritis Research UK 16211Medical Research Council G0000934NCRR NIH HHS U54 RR020278NIAID NIH HHS AI067152NIAID NIH HHS U19 AI067152NIDDK NIH HHS DK062432NIDDK NIH HHS DK064869NIDDK NIH HHS R01 DK064869NIDDK NIH HHS U01 DK062432NINDS NIH HHS NS21799Wellcome TrustWellcome Trust 068545/Z/02
6 · The paper itself

Abstract

The human MHC represents the strongest susceptibility locus for autoimmune diseases. However, the identification of the true predisposing gene(s) has been handicapped by the strong linkage disequilibrium across the region. Furthermore, most studies to date have been limited to the examination of a subset of the HLA and non-HLA genes with a marker density and sample size insufficient for mapping all independent association signals. We genotyped a panel of 1,472 SNPs to capture the common genomic variation across the 3.44 megabase (Mb) classic MHC region in 10,576 DNA samples derived from patients with systemic lupus erythematosus, Crohn's disease, ulcerative colitis, rheumatoid arthritis, myasthenia gravis, selective IgA deficiency, multiple sclerosis, and appropriate control samples. We identified the primary association signals for each disease and performed conditional regression to identify independent secondary signals. The data demonstrate that MHC associations with autoimmune diseases result from complex, multilocus effects that span the entire region.

Indexed as

Chromosome MappingGenetic Predisposition to DiseaseDatabases, GeneticGenetic TestingHLA AntigensHumansImmune System DiseasesMajor Histocompatibility ComplexPolymorphism, Single NucleotideHLA Antigens

Identifiers

PMID19846760
PMCPMC2773992
OpenAlexW2015992070

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.