Evidence map›Paper›PMID 19843518›Full record

ArticleThe Journal of biological chemistry2009

Structure and function of the intracellular region of the plexin-b1 transmembrane receptor.

Yufeng Tong, Prasanta K Hota, Junia Y Penachioni, Mehdi B Hamaneh, Soonjeung Kim, Rebecca S Alviani, Limin Shen, Hao He, Wolfram Tempel, Luca Tamagnone and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 95 citations in OpenAlex.

  1. Semaphorins and Their Role in Neuropathic Pain.Life (Basel, Switzerland) · 2026
    Review
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  5. Structural Dynamics of Rho GTPases.Journal of molecular biology · 2025
    Review
  6. Article
  7. New Promising Routes in Peptic Ulcers: Toll-like Receptors and Semaphorins.Endocrine, metabolic & immune disorders drug targets · 2024
    Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Yufeng TongDepartments of Physiology and Biophysics, Case Western Reserve University School of Medicine, Cleveland, Ohio 44106, USA.
Prasanta K Hota
Junia Y Penachioni
Mehdi B Hamaneh
Soonjeung Kim
Rebecca S Alviani
Limin Shen
Hao He
Wolfram Tempel
Luca Tamagnone
Hee-Won Park
Matthias Buck
Case Western Reserve University · USUniversity of Toronto · CACandiolo Cancer Institute · ITStructural Genomics Consortium · CAUniversity School · US

Funding

Signaling Biophysics of Protein-GTPase InteractionsR01GM073071 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI BUCK, MATTHIAS · 2005 to 2009
$1.4M
Molecular Mechanisms of Plexin Signaling in the Heart and Vascular SystemK02HL084384 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI BUCK, MATTHIAS · 2006 to 2010
$506k
NHLBI NIH HHS K02 HL084384NHLBI NIH HHS K02HL084384NIGMS NIH HHS R01 GM073071NIGMS NIH HHS R01GM73071Wellcome Trust
6 · The paper itself

Abstract

Members of the plexin family are unique transmembrane receptors in that they interact directly with Rho family small GTPases; moreover, they contain a GTPase-activating protein (GAP) domain for R-Ras, which is crucial for plexin-mediated regulation of cell motility. However, the functional role and structural basis of the interactions between the different intracellular domains of plexins remained unclear. Here we present the 2.4 A crystal structure of the complete intracellular region of human plexin-B1. The structure is monomeric and reveals that the GAP domain is folded into one structure from two segments, separated by the Rho GTPase binding domain (RBD). The RBD is not dimerized, as observed previously. Instead, binding of a conserved loop region appears to compete with dimerization and anchors the RBD to the GAP domain. Cell-based assays on mutant proteins confirm the functional importance of this coupling loop. Molecular modeling based on structural homology to p120(GAP).H-Ras suggests that Ras GTPases can bind to the plexin GAP region. Experimentally, we show that the monomeric intracellular plexin-B1 binds R-Ras but not H-Ras. These findings suggest that the monomeric form of the intracellular region is primed for GAP activity and extend a model for plexin activation.

Indexed as

Models, MolecularAnimalsCell MovementCrystallography, X-RayHumansNerve Tissue Proteinsp120 GTPase Activating ProteinProtein BindingProtein FoldingProtein Structure, SecondaryProtein Structure, Tertiaryras ProteinsReceptors, Cell Surfacerho GTP-Binding ProteinsStructure-Activity RelationshipNerve Tissue Proteinsp120 GTPase Activating ProteinPLXNB1 protein, humanras ProteinsReceptors, Cell Surfacerho GTP-Binding ProteinsRRAS protein, human

Identifiers

PMID19843518
PMCPMC2791024
OpenAlexW1980388816

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.