Evidence map›Paper›PMID 19843449›Full record

ArticleBiophysical journal2009

Spatial distribution and mobility of the Ran GTPase in live interphase cells.

Asmahan Abu-Arish, Petr Kalab, Josh Ng-Kamstra, Karsten Weis, Cécile Fradin

Open access · greenAbstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

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  10. Single-molecule studies of nucleocytoplasmic transport: from one dimension to three dimensions.Integrative biology : quantitative biosciences from nano to macro · 2012
    Review
  11. Article
  12. Single molecule studies of nucleocytoplasmic transport.Biochimica et biophysica acta · 2011
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Asmahan Abu-ArishDepartment of Physics and Astronomy, McMaster University, Hamilton, Ontario, Canada.
Petr Kalab
Josh Ng-Kamstra
Karsten Weis
Cécile Fradin
McMaster University · CAUniversity of California, Berkeley · US

Funding

Cellular functions of Ran GTPaseZIABC011084 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KALAB, PETR · 2009 to 2016
$4.3M
6 · The paper itself

Abstract

The GTPase Ran is a key regulator of molecular transport through nuclear pore complex (NPC) channels. To analyze the role of Ran in its nuclear transport function, we used several quantitative fluorescence techniques to follow the distribution and dynamics of an enhanced yellow fluorescent protein (EYFP)-Ran in HeLa cells. The diffusion coefficient of the majority of EYFP-Ran molecules throughout the cells corresponded to an unbound state, revealing the remarkably dynamic Ran regulation. Although we observed no significant immobile Ran populations in cells, approximately 10% of the cytoplasmic EYFP-Ran and 30% of the nuclear EYFP-Ran exhibited low mobility indicative of molecular interactions. The high fraction of slow nuclear EYFP-Ran reflects the expected numerous interactions of nuclear RanGTP with nuclear transport receptors. However, it is not high enough to support retention mechanisms as the main cause for the observed nuclear accumulation of Ran. The highest cellular concentration of EYFP-Ran was detected at the nuclear envelope, corresponding to approximately 200 endogenous Ran molecules for each NPC, and exceeding the currently estimated NPC channel transport capacity. Together with the relatively long residence time of EYFP-Ran at the nuclear envelope (33 +/- 14 ms), these observations suggest that only a fraction of the Ran concentrated at NPCs transits through NPC channels.

Indexed as

AlgorithmsBacterial ProteinsCell NucleusCytoplasmDiffusionFluorescenceFluorescence Recovery After PhotobleachingHeLa CellsHumansInterphaseKineticsLuminescent ProteinsMicroscopy, ConfocalModels, BiologicalMotionNuclear EnvelopeBacterial ProteinsLuminescent Proteinsran GTP-Binding ProteinRAN protein, humanyellow fluorescent protein, Bacteria

Identifiers

PMID19843449
PMCPMC2764085
OpenAlexW2032533558

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.