Evidence map›Paper›PMID 19843224›Full record

ArticleMolecular microbiology2010

Activation of sigma 28-dependent transcription in Escherichia coli by the cyclic AMP receptor protein requires an unusual promoter organization.

Kerry Hollands, David J Lee, Georgina S Lloyd, Stephen J W Busby

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Transcription activation inEcoSal Plus · 2024
    Review
  3. Structural basis of bacterial σThe EMBO journal · 2020
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Kerry HollandsSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, UK.
David J Lee
Georgina S Lloyd
Stephen J W Busby
University of Birmingham · GB

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust
6 · The paper itself

Abstract

The Escherichia coli aer regulatory region contains a single promoter that is recognized by RNA polymerase containing the flagellar sigma factor, sigma(28). Expression from this promoter is dependent on direct activation by the cyclic AMP receptor protein, which binds to a target centred 49.5 base pairs upstream from the transcript start. Activator-dependent transcription from the aer promoter was reconstituted in vitro, and a tethered inorganic nuclease was used to find the position of the C-terminal domains of the RNA polymerase alpha subunits in transcriptionally competent open complexes. We report that the ternary activator--RNA polymerase--aer promoter open complex is organized differently from complexes at previously characterized promoters. Among other E. coli promoters recognized by RNA polymerase containing sigma(28), only the trg promoter is activated directly by the cyclic AMP receptor protein. The organization of the different promoter elements and the activator binding site at the trg promoter is the same as at the aer promoter, suggesting a common activation mechanism.

Indexed as

Promoter Regions, GeneticTranscription, GeneticBacterial ProteinsBase Sequencebeta-GalactosidaseBinding SitesCarrier ProteinsDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsGenes, ReporterIntercellular Signaling Peptides and ProteinsModels, BiologicalMolecular Sequence DataReceptors, Cyclic AMPSigma FactorAer protein, E coliBacterial Proteinsbeta-GalactosidaseCarrier Proteinscyclic AMP receptor protein, E coliDNA-Binding ProteinsEscherichia coli ProteinsFliA protein, BacteriaIntercellular Signaling Peptides and ProteinsReceptors, Cyclic AMPSigma Factor

Identifiers

PMID19843224
PMCPMC2859248
OpenAlexW2136628260

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.