ArticleInternational journal of plant genomics2009
STIFDB-Arabidopsis Stress Responsive Transcription Factor DataBase.
Article in International journal of plant genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- The role of DNA content in shaping chromatin architecture and gene expression.The Plant journal : for cell and molecular biology · 2025Article
- Detoxifying the heavy metals: a multipronged study of tolerance strategies against heavy metals toxicity in plants.Frontiers in plant science · 2023Review
- Computational analysis of potential candidate genes involved in the cold stress response of ten Rosaceae members.BMC genomics · 2022Article
- Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis.BMC plant biology · 2019Article
- Analysis of bHLH coding genes ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2019Article
- Variations in the Structure and Evolution of RiceEvolutionary bioinformatics online · 2019Article
- Transcriptomic analysis and discovery of genes in the response of Arachis hypogaea to drought stress.Molecular biology reports · 2018Article
- Heavy Metal Stress, Signaling, and Tolerance Due to Plant-Associated Microbes: An Overview.Frontiers in plant science · 2018Review
- Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Review
- Transcriptome differences between fiber-type and seed-typePhysiology and molecular biology of plants : an international journal of functional plant biology · 2016Article
- Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.Nucleic acids research · 2016Article
- Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology.BMC genomics · 2015Article
- Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.BMC genomics · 2015Article
- DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species.Database : the journal of biological databases and curation · 2015Article
- Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining.Rice (New York, N.Y.) · 2015Article
- Heavy Metal Tolerance in Plants: Role of Transcriptomics, Proteomics, Metabolomics, and Ionomics.Frontiers in plant science · 2015Review
- Gleditsia sinensis: transcriptome sequencing, construction, and application of its protein-protein interaction network.BioMed research international · 2014Article
- Interactions Among Plant Transcription Factors Regulating Expression of Stress-responsive Genes.Bioinformatics and biology insights · 2014Article
- Comparative transcriptome analysis of leaves and roots in response to sudden increase in salinity in Brassica napus by RNA-seq.BioMed research international · 2014Article
- Identification of stress-responsive genes in Ammopiptanthus mongolicus using ESTs generated from cold- and drought-stressed seedlings.BMC plant biology · 2013Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Elucidating the key players of molecular mechanism that mediate the complex stress-responses in plants system is an important step to develop improved variety of stress tolerant crops. Understanding the effects of different types of biotic and abiotic stress is a rapidly emerging domain in the area of plant research to develop better, stress tolerant plants. Information about the transcription factors, transcription factor binding sites, function annotation of proteins coded by genes expressed during abiotic stress (for example: drought, cold, salinity, excess light, abscisic acid, and oxidative stress) response will provide better understanding of this phenomenon. STIFDB is a database of abiotic stress responsive genes and their predicted abiotic transcription factor binding sites in Arabidopsis thaliana. We integrated 2269 genes upregulated in different stress related microarray experiments and surveyed their 1000 bp and 100 bp upstream regions and 5'UTR regions using the STIF algorithm and identified putative abiotic stress responsive transcription factor binding sites, which are compiled in the STIFDB database. STIFDB provides extensive information about various stress responsive genes and stress inducible transcription factors of Arabidopsis thaliana. STIFDB will be a useful resource for researchers to understand the abiotic stress regulome and transcriptome of this important model plant system.
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Registered trials
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