Evidence map›Paper›PMID 19841479›Full record

ArticleThe Journal of biological chemistry2009

Identification of SMARCAL1 as a component of the DNA damage response.

Lisa Postow, Eileen M Woo, Brian T Chait, Hironori Funabiki

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 111 citations in OpenAlex.

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  6. HeterozygousGenes & development · 2024
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  7. Review
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  13. On the Interaction Between SMARCAL1 and BRG1.Frontiers in cell and developmental biology · 2022
    Article
  14. Review
  15. Article
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  17. Article
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  20. Review

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Lisa PostowLaboratory of Chromosome and Cell Biology, The Rockefeller University, New York, New York 10065, USA. PostowL@rockefeller.edu
Eileen M Woo
Brian T Chait
Hironori Funabiki
Rockefeller University · US

Funding

YNG1 PHD BINDING TO H3 3METHYL AT K4 PROMOTES TRANSCRIPTION AT TARGETED ORFSP41RR000862 · NCRR · ROCKEFELLER UNIVERSITY · PI DARNELL, JAMES E · 1985 to 2011
$16.1M
Mechanisms of Cell Regulation and TransformationT32CA009673 · NCI · ROCKEFELLER UNIVERSITY · PI KAPOOR, TARUN M. · 1991 to 2018
$7.0M
Signaling Biophysics of Protein-GTPase InteractionsR01GM073071 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI BUCK, MATTHIAS · 2005 to 2009
$1.4M
Molecular Mechanisms of Plexin Signaling in the Heart and Vascular SystemK02HL084384 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI BUCK, MATTHIAS · 2006 to 2010
$506k
NCI NIH HHS T32 CA009673NCRR NIH HHS P41 RR000862NHLBI NIH HHS K02HL084384NIGMS NIH HHS R01GM73071
6 · The paper itself

Abstract

SMARCAL1 (also known as HARP) is a SWI/SNF family protein with an ATPase activity stimulated by DNA containing both single-stranded and double-stranded regions. Mutations in SMARCAL1 are associated with the disease Schimke immuno-osseous dysplasia, a multisystem autosomal recessive disorder characterized by T cell immunodeficiency, growth inhibition, and renal dysfunction. The cellular function of SMARCAL1, however, is unknown. Here, using Xenopus egg extracts and mass spectrometry, we identify SMARCAL1 as a protein recruited to double-stranded DNA breaks. SMARCAL1 binds to double-stranded breaks and stalled replication forks in both egg extract and human cells, specifically colocalizing with the single-stranded DNA binding factor RPA. In addition, SMARCAL1 interacts physically with RPA independently of DNA. SMARCAL1 is phosphorylated in a caffeine-sensitive manner in response to double-stranded breaks and stalled replication forks. It has been suggested that stalled forks can be stabilized by a mechanism involving caffeine-sensitive kinases, or they collapse and subsequently recruit Rad51 to promote homologous recombination repair. We show that depletion of SMARCAL1 from U2OS cells leads to increased frequency of RAD51 foci upon generation of stalled replication forks, indicating that fork breakdown is more prevalent in the absence of SMARCAL1. We propose that SMARCAL1 is a novel DNA damage-binding protein involved in replication fork stabilization.

Indexed as

DNA Breaks, Double-StrandedDNA DamageDNA ReplicationAbnormalities, MultipleAnimalsDNA HelicasesDNA, Single-StrandedHumansMutationPhosphorylationRad51 RecombinaseXenopus laevisDNA HelicasesDNA, Single-StrandedRAD51 protein, humanRad51 RecombinaseSMARCAL1 protein, human

Identifiers

PMID19841479
PMCPMC2791023
OpenAlexW2108607349

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.