Evidence map›Paper›PMID 19837832›Full record

ArticleApplied and environmental microbiology2009

Functional genomic analysis of two Staphylococcus aureus phages isolated from the dairy environment.

Pilar García, Beatriz Martínez, José María Obeso, Rob Lavigne, Rudi Lurz, Ana Rodríguez

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 59 citations in OpenAlex.

  1. Trial
  2. Isolation, genomic characterization, and biocontrol potential of a bacteriophage cocktail against Staphylococcus aureus in milk.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
  3. Review
  4. Review
  5. Comprehensive characterization ofCurrent research in food science · 2026
    Article
  6. NovelInternational journal of molecular sciences · 2025
    Article
  7. Article
  8. Characterization of a novelMicrobiology spectrum · 2025
    Article
  9. Characteristics of a novel temperate bacteriophage against Staphylococcus arlettae (vB_SarS_BM31).International microbiology : the official journal of the Spanish Society for Microbiology · 2023
    Article
  10. Article
  11. Article
  12. Phages and Enzybiotics in Food Biopreservation.Molecules (Basel, Switzerland) · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Efficacy of Bacteriophages AgainstPharmaceuticals (Basel, Switzerland) · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Pilar GarcíaInstituto de Productos Lácteos de Asturias, Consejo Superior de Investigaciones Científicas, Apdo. 85, 33300 Villaviciosa, Asturias, Spain. pgarcia@ipla.csic.es
Beatriz Martínez
José María Obeso
Rob Lavigne
Rudi Lurz
Ana Rodríguez
Consejo Superior de Investigaciones Científicas · ESInstituto de Productos Lácteos de Asturias · ESKU Leuven · BEMax Planck Institute for Molecular Genetics · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genomes of the two lytic mutant Staphylococcus aureus bacteriophages, vB_SauS-phiIPLA35 (phiIPLA35) and vB_SauS-phiIPLA88 (phiIPLA88), isolated from milk have been analyzed. Their genomes are 45,344 bp and 42,526 bp long, respectively, and contain 62 and 61 open reading frames (ORFS). Enzymatic analyses and sequencing revealed that the phiIPLA35 DNA molecule has 3'-protruding cohesive ends (cos) 10 bp long, whereas phiIPLA88 DNA is 4.5% terminally redundant and most likely is packaged by a headful mechanism. N-terminal amino acid sequencing, mass spectrometry, bioinformatic analyses, and functional analyses enabled the assignment of putative functions to 58 gene products, including DNA packaging proteins, morphogenetic proteins, lysis components, and proteins necessary for DNA recombination, modification, and replication. Point mutations in their lysogeny control-associated genes explain their strictly lytic behavior. Muralytic activity associated with other structural components has been detected in virions of both phages. Comparative analysis of phiIPLA35 and phiIPLA88 genome structures shows that they resemble those of phi12 and phi11, respectively, both representatives of large genomic groupings within the S. aureus-infecting phages.

Indexed as

Genome, ViralAmino Acid SequenceAnimalsAttachment Sites, MicrobiologicalBase SequenceDNA ReplicationDNA, ViralLysogenyMilkMolecular Sequence DataOpen Reading FramesStaphylococcus PhagesViral ProteinsViral Structural ProteinsDNA, ViralViral ProteinsViral Structural Proteins

Identifiers

PMID19837832
PMCPMC2794103
OpenAlexW2137252805

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.