Evidence map›Paper›PMID 19837063›Full record

ArticleExperimental cell research2010

Identification of tubby and tubby-like protein 1 as eat-me signals by phage display.

Nora B Caberoy, Dony Maiguel, Youngbae Kim, Wei Li

Abstract read
In one paragraph

Article in Experimental cell research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
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  5. Comparative Ligandomic Analysis of Human Lung Epithelial Cells Exposed to PMBiomedical and environmental sciences : BES · 2020
    Article
  6. Article
  7. Article
  8. Tubby-like protein 1 (Tulp1) is a target of microRNA-134 and is down-regulated in experimental epilepsy.International journal of physiology, pathophysiology and pharmacology · 2017
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
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  17. Article
  18. Review
  19. Review
  20. Interaction analysis through proteomic phage display.BioMed research international · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nora B CaberoyBascom Palmer Eye Institute, Department of Ophthalmology, University of Miami Miller School of Medicine, 1638 NW 10th Avenue, Miami, FL 33136, USA.
Dony Maiguel
Youngbae Kim
Wei Li
University of Miami · US

Funding

Shared Equipment ModuleP30EY014801 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Victor L Perez · 2004 to 2026
$12.2M
PROFILING AUTOANTIGENS IN UVEITISR01EY016211 · NEI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LI, WEI · 2005 to 2010
$1.8M
NEI NIH HHS P30 EY014801NEI NIH HHS P30-EY014801NEI NIH HHS R01 EY016211NEI NIH HHS R01EY016211
6 · The paper itself

Abstract

Phagocytosis is an important process for the removal of apoptotic cells or cellular debris. Eat-me signals control the initiation of phagocytosis and hold the key for in-depth understanding of its molecular mechanisms. However, because of difficulties to identify unknown eat-me signals, only a limited number of them have been identified and characterized. Using a newly developed functional cloning strategy of open reading frame (ORF) phage display, we identified nine putative eat-me signals, including tubby-like protein 1 (Tulp1). This further led to the elucidation of tubby as the second eat-me signal in the same protein family. Both proteins stimulated phagocytosis of retinal pigment epithelium (RPE) cells and macrophages. Tubby-conjugated fluorescent microbeads facilitated RPE phagocytosis. Tubby and Tulp1, but not other family members, enhanced the uptake of membrane vesicles by RPE cells in synergy. Retinal membrane vesicles of Tubby mice and Tulp1(-/-) mice showed reduced activities for RPE phagocytosis, which were compensated by purified tubby and Tulp1, respectively. These data reveal a novel activity of tubby and Tulp1, and demonstrate that unbiased identification of eat-me signals by the broadly applicable strategy of ORF phage display can provide detailed insights into phagocyte biology.

Indexed as

Peptide LibraryAdaptor Proteins, Signal TransducingAnimalsCell LineCell Line, TumorCell Membrane StructuresCloning, MolecularEye ProteinsHeLa CellsHumansJurkat CellsMacrophagesMiceMice, Inbred C57BLMice, KnockoutMicrospheresAdaptor Proteins, Signal TransducingEye ProteinsPeptide LibraryProteinsRecombinant Fusion ProteinsTUB protein, humanTub protein, mouseTULP1 protein, humanTulp1 protein, mouse

Identifiers

PMID19837063
PMCPMC2789476
OpenAlexW2073639897

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.