Evidence map›Paper›PMID 19836472›Full record

ArticleBiochimica et biophysica acta2010

Quantitative mass spectrometry of diabetic kidney tubules identifies GRAP as a novel regulator of TGF-beta signaling.

Timothy D Cummins, Michelle T Barati, Susan C Coventry, Sarah A Salyer, Jon B Klein, David W Powell

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. MNK2 governs the macrophage antiinflammatory phenotype.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  3. Article
  4. Article
  5. Article
  6. Proteomics and systems biology for understanding diabetic nephropathy.Journal of cardiovascular translational research · 2012
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Timothy D CumminsDepartment of Biochemistry and Molecular Biology, University of Louisville School of Medicine, Louisville, KY, USA.
Michelle T Barati
Susan C Coventry
Sarah A Salyer
Jon B Klein
David W Powell
University of Louisville · US

Funding

Strategic Vision & Impact on Environmental HealthP30ES014443 · NIEHS · UNIVERSITY OF LOUISVILLE · PI TOLLERUD, DAVID J · 2007 to 2010
$4.4M
Mass Spectrometry Analysis of Notch4 Networks in Diabetes-Related Tubule InjuryK01DK076743 · NIDDK · UNIVERSITY OF LOUISVILLE · PI POWELL, DAVID W. · 2007 to 2009
$384k
NIDDK NIH HHS DK176743NIDDK NIH HHS K01 DK076743NIEHS NIH HHS P30 ES014443NIEHS NIH HHS P30ES014443
6 · The paper itself

Abstract

The aim of this study was to define novel mediators of tubule injury in diabetic kidney disease. For this, we used state-of-the-art proteomic methods combined with a label-free quantitative strategy to define protein expression differences in kidney tubules from transgenic OVE26 type 1 diabetic and control mice. The analysis was performed with diabetic samples that displayed a pro-fibrotic phenotype. We have identified 476 differentially expressed proteins. Bioinformatic analysis indicated several clusters of regulated proteins in relevant functional groups such as TGF-beta signaling, tight junction maintenance, oxidative stress, and glucose metabolism. Mass spectrometry detected expression changes of four physiologically relevant proteins were confirmed by immunoblot analysis. Of these, the Grb2-related adaptor protein (GRAP) was up-regulated in kidney tubules from diabetic mice and fibrotic kidneys from diabetic patients, and subsequently confirmed as a novel component of TGF-beta signaling in cultured human renal tubule cells. Thus, indicating a potential novel role for GRAP in TGF-beta-induced tubule injury in diabetic kidney disease. Although we targeted a specific disease, this approach offers a robust, high-sensitivity methodology that can be applied to the discovery of novel mediators for any experimental or disease condition.

Indexed as

Adaptor Proteins, Signal TransducingAnimalsCells, CulturedDiabetes Mellitus, Type 1Diabetic NephropathiesHumansKidney TubulesMiceModels, BiologicalProteomicsRecombinant ProteinsSignal TransductionTandem Mass SpectrometryTransforming Growth Factor betaUp-RegulationAdaptor Proteins, Signal TransducingGrap protein, humanRecombinant ProteinsTransforming Growth Factor beta

Identifiers

PMID19836472
PMCPMC2829334
OpenAlexW1981858033

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.