Evidence map›Paper›PMID 19836046›Full record

ArticleVirology2009

Cell-type specific transcriptional activities among different papillomavirus long control regions and their regulation by E2.

Matthias Ottinger, Jennifer A Smith, Michal-Ruth Schweiger, Dana Robbins, Maria L C Powell, Jianxin You, Peter M Howley

Abstract read
In one paragraph

Article in Virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  17. Genome-wide siRNA screen identifies SMCX, EP400, and Brd4 as E2-dependent regulators of human papillomavirus oncogene expression.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Matthias OttingerDepartment of Pathology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, MA 02115, USA.
Jennifer A Smith
Michal-Ruth Schweiger
Dana Robbins
Maria L C Powell
Jianxin You
Peter M Howley

Funding

VIRAL ONCOPROTEIN PERTURBATION OF RB/E2F PATHWAYP01CA050661 · NCI · DANA-FARBER CANCER INSTITUTE · PI HOWLEY, PETER M · 1989 to 2013
$35.8M
Tumor Cell Biology Training ProgramT32CA009361 · NCI · DANA-FARBER CANCER INSTITUTE · PI GRAY, NATHANAEL SCHIANDER · 1985 to 2015
$8.9M
Papillomavirus E2 Functions: Cellular Regulation and EffectorsR01CA116720 · NCI · HARVARD MEDICAL SCHOOL · PI HOWLEY, PETER M · 2006 to 2015
$2.8M
Mechanism of Brd4-mediated papillomavirus host interactionsR01CA142723 · NCI · UNIVERSITY OF PENNSYLVANIA · PI YOU, JIANXIN · 2010 to 2014
$1.8M
NCI NIH HHS P01 CA050661NCI NIH HHS R01 CA116720NCI NIH HHS R01CA116720NCI NIH HHS R01 CA142723NCI NIH HHS T32 CA009361NCI NIH HHS T32CA009361
6 · The paper itself

Abstract

This study systematically examined the viral long control region (LCR) activities and their responses to E2 for human papillomavirus (HPV) types 11, 16, and 18 as well as bovine papillomavirus 1 (BPV1) in a number of different cell types, including human cervical cancer cell lines, human oral keratinocytes, BJ fibroblasts, as well as CV1 cells. The study revealed cell- and virus-type specific differences among the individual LCRs and their regulation by E2. In addition, the integration of the LCR into the host genome was identified as a critical determinant for LCR activity and its response to E2. Collectively, these data indicate a more complex level of transcriptional regulation of the LCR by cellular and viral factors than previously appreciated, including a comparatively low LCR activity and poor E2 responsiveness for HPV16 in most human cells. This study should provide a valuable framework for future transcriptional studies in the papillomavirus field.

Indexed as

AlphapapillomavirusAnimalsBovine papillomavirus 1Cell LineChlorocebus aethiopsFemaleFibroblastsGene Expression Regulation, ViralHumansKeratinocytesOncogene Proteins, ViralUterine Cervical NeoplasmsOncogene Proteins, Viral

Identifiers

PMID19836046
PMCPMC2787971

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.