Evidence map›Paper›PMID 19835633›Full record

ArticleBMC genomics2009

Characterization of the oxidative stress stimulon and PerR regulon of Campylobacter jejuni.

Kiran Palyada, Yi-Qian Sun, Annika Flint, James Butcher, Hemant Naikare, Alain Stintzi

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 148 citations in OpenAlex.

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  18. Differences in the Transcriptomic Response ofFrontiers in microbiology · 2020
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  19. RevisitingFrontiers in cellular and infection microbiology · 2020
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  20. The Anti-Microorganisms · 2019
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Kiran PalyadaDepartment of Veterinary Pathobiology, College of Veterinary Medicine, Oklahoma State University, Stillwater, OK 74078, USA. Kiran.Palyada@mpiresearch.com
Yi-Qian Sun
Annika Flint
James Butcher
Hemant Naikare
Alain Stintzi
University of Ottawa · CAOklahoma State University · US

Funding

Canadian Institutes of Health ResearchPHS HHS R01-055612
6 · The paper itself

Abstract

backgroundDuring gut colonization, the enteric pathogen Campylobacter jejuni must surmount the toxic effects of reactive oxygen species produced by its own metabolism, the host immune system, and intestinal microflora. Elucidation of C. jejuni oxidative stress defense mechanisms is critical for understanding Campylobacter pathophysiology.

resultsThe mechanisms of oxidative stress defense in C. jejuni were characterized by transcriptional profiling and phenotypic analysis of wild-type and mutant strains. To define the regulon of the peroxide-sensing regulator, PerR, we constructed an isogenic DeltaperR mutant and compared its transcriptome profile with that of the wild-type strain. Transcriptome profiling identified 104 genes that belonged to the PerR regulon. PerR appears to regulate gene expression in a manner that both depends on and is independent of the presence of iron and/or H2O2. Mutation of perR significantly reduced motility. A phenotypic analysis using the chick colonization model showed that the DeltaperR mutant exhibited attenuated colonization behavior. An analysis of changes in the transcriptome induced by exposure to H2O2, cumene hydroperoxide, or menadione revealed differential expression of genes belonging to a variety of biological pathways, including classical oxidative stress defense systems, heat shock response, DNA repair and metabolism, fatty acid biosynthesis, and multidrug efflux pumps. Mutagenic and phenotypic studies of the superoxide dismutase SodB, the alkyl-hydroxyperoxidase AhpC, and the catalase KatA, revealed a role for these proteins in oxidative stress defense and chick gut colonization.

conclusionThis study reveals an interplay between PerR, Fur, iron metabolism and oxidative stress defense, and highlights the role of these elements in C. jejuni colonization of the chick cecum and/or subsequent survival.

Indexed as

Oxidative StressRegulonAnimalsBacterial ProteinsBenzene DerivativesCampylobacter jejuniCecumChickensCluster AnalysisGene Expression ProfilingGene Expression Regulation, BacterialGene Knockout TechniquesGenetic Complementation TestHydrogen PeroxideIronMutagenesisBacterial ProteinsBenzene Derivativescumene hydroperoxideHydrogen PeroxideIronperoxide repressor proteinsRepressor ProteinsRNA, BacterialVitamin K 3

Identifiers

PMID19835633
PMCPMC2772861
OpenAlexW2004787320

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.