Evidence map›Paper›PMID 19834621›Full record

ArticlePloS one2009

3D multi-cell simulation of tumor growth and angiogenesis.

Abbas Shirinifard, J Scott Gens, Benjamin L Zaitlen, Nikodem J Popławski, Maciej Swat, James A Glazier

Abstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed.

  1. Article
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  12. Bidirectionally validatedFrontiers in bioengineering and biotechnology · 2024
    Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
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  20. Review

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Abbas ShirinifardThe Biocomplexity Institute and Department of Physics, Indiana University Bloomington, Bloomington, Indiana, United States of America. ashirini@indiana.edu
J Scott Gens
Benjamin L Zaitlen
Nikodem J Popławski
Maciej Swat
James A Glazier

Funding

MSM - Multiscale Studies of Segmentation in Vertebrate *R01GM076692 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI GLAZIER, JAMES ALEXANDER, STERN, CLAUDIO D · 2005 to 2015
$5.5M
Development and Improvement of Tissue Simulation ToolkitR01GM077138 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI D'SOUZA, ROSHAN M, GLAZIER, JAMES ALEXANDER · 2007 to 2015
$4.0M
NIGMS NIH HHS 1R01 GM077138-01A1NIGMS NIH HHS 5R01 GM076692-01NIGMS NIH HHS R01 GM076692NIGMS NIH HHS R01 GM077138
6 · The paper itself

Abstract

We present a 3D multi-cell simulation of a generic simplification of vascular tumor growth which can be easily extended and adapted to describe more specific vascular tumor types and host tissues. Initially, tumor cells proliferate as they take up the oxygen which the pre-existing vasculature supplies. The tumor grows exponentially. When the oxygen level drops below a threshold, the tumor cells become hypoxic and start secreting pro-angiogenic factors. At this stage, the tumor reaches a maximum diameter characteristic of an avascular tumor spheroid. The endothelial cells in the pre-existing vasculature respond to the pro-angiogenic factors both by chemotaxing towards higher concentrations of pro-angiogenic factors and by forming new blood vessels via angiogenesis. The tumor-induced vasculature increases the growth rate of the resulting vascularized solid tumor compared to an avascular tumor, allowing the tumor to grow beyond the spheroid in these linear-growth phases. First, in the linear-spherical phase of growth, the tumor remains spherical while its volume increases. Second, in the linear-cylindrical phase of growth the tumor elongates into a cylinder. Finally, in the linear-sheet phase of growth, tumor growth accelerates as the tumor changes from cylindrical to paddle-shaped. Substantial periods during which the tumor grows slowly or not at all separate the exponential from the linear-spherical and the linear-spherical from the linear-cylindrical growth phases. In contrast to other simulations in which avascular tumors remain spherical, our simulated avascular tumors form cylinders following the blood vessels, leading to a different distribution of hypoxic cells within the tumor. Our simulations cover time periods which are long enough to produce a range of biologically reasonable complex morphologies, allowing us to study how tumor-induced angiogenesis affects the growth rate, size and morphology of simulated tumors.

Indexed as

Neovascularization, PathologicAnimalsCell ProliferationCell Transformation, NeoplasticComputer SimulationHumansHypoxiaImaging, Three-DimensionalModels, BiologicalModels, MolecularNeoplasmsOxygenSoftwareSpheroids, CellularTime FactorsOxygen

Identifiers

PMID19834621
PMCPMC2760204

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.