Evidence map›Paper›PMID 19834477›Full record

ArticleNature protocols2009

Visualization of small GTPase activity with fluorescence resonance energy transfer-based biosensors.

Kazuhiro Aoki, Michiyuki Matsuda

Abstract read
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In one paragraph

Article in Nature protocols, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed.

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  16. bioRxiv : the preprint server for biology · 2023
    Article
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Kazuhiro AokiLaboratory of Bioimaging and Cell Signaling, Graduate School of Biostudies, Kyoto University, Kyoto, Japan.
Michiyuki Matsuda

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small GTPases act as molecular switches that regulate a variety of cellular functions, such as proliferation, cell movement and vesicle trafficking. Genetically encoded biosensors based on the principle of fluorescence resonance energy transfer (FRET) can visualize a spatio-temporal activity of small GTPases in living cells, thereby helping us to understand the role of small GTPases intuitively and vividly. Here we describe protocols of live cell imaging with the FRET biosensors. There are several types of FRET biosensors; this protocol focuses on intramolecular or unimolecular FRET biosensors of small GTPases that are made up of donor and acceptor fluorescence proteins, a small GTPase, its binding partner, and, if necessary, a subcellular localization signal. These FRET biosensors uncover the spatio-temporal activity of the small GTPases in living cells, which could not be obtained by conventional biochemical methods. Preparation of FRET biosensors and cell culture takes 6 d. Imaging and processing take 3-4 d to complete.

Indexed as

AnimalsBiosensing Techniquescdc42 GTP-Binding ProteinCell LineChlorocebus aethiopsCOS CellsEpidermal Growth FactorFluorescence Resonance Energy TransferFluorescent DyesGreen Fluorescent ProteinsHeLa CellsHumansMonomeric GTP-Binding Proteinsrac1 GTP-Binding Proteinras ProteinsRecombinant Proteinscdc42 GTP-Binding ProteinCyan Fluorescent ProteinEpidermal Growth FactorFluorescent DyesGreen Fluorescent ProteinsMonomeric GTP-Binding Proteinsrac1 GTP-Binding ProteinRAC1 protein, humanras ProteinsRecombinant Proteins

Identifiers

PMID19834477

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.